Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-154]:
1q0ra_PU0_1-154
CI=4.17


[155-214]:
1q0ra_PU0_155-214
CI=1.55


[215-297 ]:
1q0ra_PU0_215-297
CI=2.38


Level 1
PU
Molecule needs Java 1.4 Structure


[1-129]:
1q0ra_PU1_1-129
CI=4.74


[130-154]:
1q0ra_PU1_130-154
CI=1.19


[155-214]:
1q0ra_PU1_155-214
CI=1.55


[215-297 ]:
1q0ra_PU1_215-297
CI=2.38


Level 2
PU
Molecule needs Java 1.4 Structure


[1-129]:
1q0ra_PU2_1-129
CI=4.74


[130-154]:
1q0ra_PU2_130-154
CI=1.19


[155-214]:
1q0ra_PU2_155-214
CI=1.55


[215-234]:
1q0ra_PU2_215-234
CI=0.00


[235-297 ]:
1q0ra_PU2_235-297
CI=2.81


Level 3
PU
Molecule needs Java 1.4 Structure


[1-129]:
1q0ra_PU3_1-129
CI=4.74


[130-154]:
1q0ra_PU3_130-154
CI=1.19


[155-214]:
1q0ra_PU3_155-214
CI=1.55


[215-234]:
1q0ra_PU3_215-234
CI=0.00


[235-276]:
1q0ra_PU3_235-276
CI=3.84


[277-297 ]:
1q0ra_PU3_277-297
CI=0.00


Level 4
PU
Molecule needs Java 1.4 Structure


[1-129]:
1q0ra_PU4_1-129
CI=4.74


[130-154]:
1q0ra_PU4_130-154
CI=1.19


[155-198]:
1q0ra_PU4_155-198
CI=1.55


[199-214]:
1q0ra_PU4_199-214
CI=0.56


[215-234]:
1q0ra_PU4_215-234
CI=0.00


[235-276]:
1q0ra_PU4_235-276
CI=3.84


[277-297 ]:
1q0ra_PU4_277-297
CI=0.00


Level 5
PU
Molecule needs Java 1.4 Structure


[1-92]:
1q0ra_PU5_1-92
CI=3.70


[93-129]:
1q0ra_PU5_93-129
CI=3.90


[130-154]:
1q0ra_PU5_130-154
CI=1.19


[155-198]:
1q0ra_PU5_155-198
CI=1.55


[199-214]:
1q0ra_PU5_199-214
CI=0.56


[215-234]:
1q0ra_PU5_215-234
CI=0.00


[235-276]:
1q0ra_PU5_235-276
CI=3.84


[277-297 ]:
1q0ra_PU5_277-297
CI=0.00


Level 6
PU
Molecule needs Java 1.4 Structure


[1-17]:
1q0ra_PU6_1-17
CI=2.19


[18-55]:
1q0ra_PU6_18-55
CI=2.56


[56-92]:
1q0ra_PU6_56-92
CI=0.72


[93-129]:
1q0ra_PU6_93-129
CI=3.90


[130-154]:
1q0ra_PU6_130-154
CI=1.19


[155-198]:
1q0ra_PU6_155-198
CI=1.55


[199-214]:
1q0ra_PU6_199-214
CI=0.56


[215-234]:
1q0ra_PU6_215-234
CI=0.00


[235-276]:
1q0ra_PU6_235-276
CI=3.84


[277-297 ]:
1q0ra_PU6_277-297
CI=0.00


Level 7
PU
Molecule needs Java 1.4 Structure


[1-17]:
1q0ra_PU7_1-17
CI=2.19


[18-55]:
1q0ra_PU7_18-55
CI=2.56


[56-73]:
1q0ra_PU7_56-73
CI=0.93


[74-92]:
1q0ra_PU7_74-92
CI=0.00


[93-129]:
1q0ra_PU7_93-129
CI=3.90


[130-154]:
1q0ra_PU7_130-154
CI=1.19


[155-198]:
1q0ra_PU7_155-198
CI=1.55


[199-214]:
1q0ra_PU7_199-214
CI=0.56


[215-234]:
1q0ra_PU7_215-234
CI=0.00


[235-276]:
1q0ra_PU7_235-276
CI=3.84


[277-297 ]:
1q0ra_PU7_277-297
CI=0.00


Level 8
PU
Molecule needs Java 1.4 Structure


[1-17]:
1q0ra_PU8_1-17
CI=2.19


[18-55]:
1q0ra_PU8_18-55
CI=2.56


[56-73]:
1q0ra_PU8_56-73
CI=0.93


[74-92]:
1q0ra_PU8_74-92
CI=0.00


[93-129]:
1q0ra_PU8_93-129
CI=3.90


[130-154]:
1q0ra_PU8_130-154
CI=1.19


[155-181]:
1q0ra_PU8_155-181
CI=1.16


[182-198]:
1q0ra_PU8_182-198
CI=0.43


[199-214]:
1q0ra_PU8_199-214
CI=0.56


[215-234]:
1q0ra_PU8_215-234
CI=0.00


[235-276]:
1q0ra_PU8_235-276
CI=3.84


[277-297 ]:
1q0ra_PU8_277-297
CI=0.00


Level 9
PU
Molecule needs Java 1.4 Structure


[1-17]:
1q0ra_PU9_1-17
CI=2.19


[18-38]:
1q0ra_PU9_18-38
CI=0.70


[39-55]:
1q0ra_PU9_39-55
CI=0.33


[56-73]:
1q0ra_PU9_56-73
CI=0.93


[74-92]:
1q0ra_PU9_74-92
CI=0.00


[93-129]:
1q0ra_PU9_93-129
CI=3.90


[130-154]:
1q0ra_PU9_130-154
CI=1.19


[155-181]:
1q0ra_PU9_155-181
CI=1.16


[182-198]:
1q0ra_PU9_182-198
CI=0.43


[199-214]:
1q0ra_PU9_199-214
CI=0.56


[215-234]:
1q0ra_PU9_215-234
CI=0.00


[235-276]:
1q0ra_PU9_235-276
CI=3.84


[277-297 ]:
1q0ra_PU9_277-297
CI=0.00


Level 10
PU
Molecule needs Java 1.4 Structure


[1-17]:
1q0ra_PU10_1-17
CI=2.19


[18-38]:
1q0ra_PU10_18-38
CI=0.70


[39-55]:
1q0ra_PU10_39-55
CI=0.33


[56-73]:
1q0ra_PU10_56-73
CI=0.93


[74-92]:
1q0ra_PU10_74-92
CI=0.00


[93-129]:
1q0ra_PU10_93-129
CI=3.90


[130-154]:
1q0ra_PU10_130-154
CI=1.19


[155-181]:
1q0ra_PU10_155-181
CI=1.16


[182-198]:
1q0ra_PU10_182-198
CI=0.43


[199-214]:
1q0ra_PU10_199-214
CI=0.56


[215-234]:
1q0ra_PU10_215-234
CI=0.00


[235-252]:
1q0ra_PU10_235-252
CI=0.60


[253-276]:
1q0ra_PU10_253-276
CI=0.78


[277-297 ]:
1q0ra_PU10_277-297
CI=0.00


Final level 11

PU
Molecule needs Java 1.4 Structure


[1-17]:
1q0ra_PU_1-17
CI=2.19


[18-38]:
1q0ra_PU_18-38
CI=0.70


[39-55]:
1q0ra_PU_39-55
CI=0.33


[56-73]:
1q0ra_PU_56-73
CI=0.93


[74-92]:
1q0ra_PU_74-92
CI=0.00


[93-109]:
1q0ra_PU_93-109
CI=0.96


[110-129]:
1q0ra_PU_110-129
CI=0.18


[130-154]:
1q0ra_PU_130-154
CI=1.19


[155-181]:
1q0ra_PU_155-181
CI=1.16


[182-198]:
1q0ra_PU_182-198
CI=0.43


[199-214]:
1q0ra_PU_199-214
CI=0.56


[215-234]:
1q0ra_PU_215-234
CI=0.00


[235-252]:
1q0ra_PU_235-252
CI=0.60


[253-276]:
1q0ra_PU_253-276
CI=0.78


[277-297 ]:
1q0ra_PU_277-297
CI=0.00