Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-130]:
1q1aa_PU0_1-130
CI=2.25


[131-177]:
1q1aa_PU0_131-177
CI=3.06


[178-285 ]:
1q1aa_PU0_178-285
CI=1.82


Level 1
PU
Molecule needs Java 1.4 Structure


[1-21]:
1q1aa_PU1_1-21
CI=0.00


[22-130]:
1q1aa_PU1_22-130
CI=2.63


[131-177]:
1q1aa_PU1_131-177
CI=3.06


[178-285 ]:
1q1aa_PU1_178-285
CI=1.82


Level 2
PU
Molecule needs Java 1.4 Structure


[1-21]:
1q1aa_PU2_1-21
CI=0.00


[22-130]:
1q1aa_PU2_22-130
CI=2.63


[131-177]:
1q1aa_PU2_131-177
CI=3.06


[178-262]:
1q1aa_PU2_178-262
CI=2.29


[263-285 ]:
1q1aa_PU2_263-285
CI=0.08


Level 3
PU
Molecule needs Java 1.4 Structure


[1-21]:
1q1aa_PU3_1-21
CI=0.00


[22-39]:
1q1aa_PU3_22-39
CI=1.12


[40-81]:
1q1aa_PU3_40-81
CI=1.09


[82-130]:
1q1aa_PU3_82-130
CI=2.18


[131-177]:
1q1aa_PU3_131-177
CI=3.06


[178-262]:
1q1aa_PU3_178-262
CI=2.29


[263-285 ]:
1q1aa_PU3_263-285
CI=0.08


Level 4
PU
Molecule needs Java 1.4 Structure


[1-21]:
1q1aa_PU4_1-21
CI=0.00


[22-39]:
1q1aa_PU4_22-39
CI=1.12


[40-81]:
1q1aa_PU4_40-81
CI=1.09


[82-130]:
1q1aa_PU4_82-130
CI=2.18


[131-177]:
1q1aa_PU4_131-177
CI=3.06


[178-209]:
1q1aa_PU4_178-209
CI=0.23


[210-262]:
1q1aa_PU4_210-262
CI=3.11


[263-285 ]:
1q1aa_PU4_263-285
CI=0.08


Level 5
PU
Molecule needs Java 1.4 Structure


[1-21]:
1q1aa_PU5_1-21
CI=0.00


[22-39]:
1q1aa_PU5_22-39
CI=1.12


[40-56]:
1q1aa_PU5_40-56
CI=1.09


[57-81]:
1q1aa_PU5_57-81
CI=0.59


[82-130]:
1q1aa_PU5_82-130
CI=2.18


[131-177]:
1q1aa_PU5_131-177
CI=3.06


[178-209]:
1q1aa_PU5_178-209
CI=0.23


[210-262]:
1q1aa_PU5_210-262
CI=3.11


[263-285 ]:
1q1aa_PU5_263-285
CI=0.08


Level 6
PU
Molecule needs Java 1.4 Structure


[1-21]:
1q1aa_PU6_1-21
CI=0.00


[22-39]:
1q1aa_PU6_22-39
CI=1.12


[40-56]:
1q1aa_PU6_40-56
CI=1.09


[57-81]:
1q1aa_PU6_57-81
CI=0.59


[82-103]:
1q1aa_PU6_82-103
CI=0.00


[104-130]:
1q1aa_PU6_104-130
CI=1.69


[131-177]:
1q1aa_PU6_131-177
CI=3.06


[178-209]:
1q1aa_PU6_178-209
CI=0.23


[210-262]:
1q1aa_PU6_210-262
CI=3.11


[263-285 ]:
1q1aa_PU6_263-285
CI=0.08


Level 7
PU
Molecule needs Java 1.4 Structure


[1-21]:
1q1aa_PU7_1-21
CI=0.00


[22-39]:
1q1aa_PU7_22-39
CI=1.12


[40-56]:
1q1aa_PU7_40-56
CI=1.09


[57-81]:
1q1aa_PU7_57-81
CI=0.59


[82-103]:
1q1aa_PU7_82-103
CI=0.00


[104-130]:
1q1aa_PU7_104-130
CI=1.69


[131-177]:
1q1aa_PU7_131-177
CI=3.06


[178-209]:
1q1aa_PU7_178-209
CI=0.23


[210-234]:
1q1aa_PU7_210-234
CI=0.52


[235-262]:
1q1aa_PU7_235-262
CI=2.37


[263-285 ]:
1q1aa_PU7_263-285
CI=0.08


Final level 8

PU
Molecule needs Java 1.4 Structure


[1-21]:
1q1aa_PU_1-21
CI=0.00


[22-39]:
1q1aa_PU_22-39
CI=1.12


[40-56]:
1q1aa_PU_40-56
CI=1.09


[57-81]:
1q1aa_PU_57-81
CI=0.59


[82-103]:
1q1aa_PU_82-103
CI=0.00


[104-130]:
1q1aa_PU_104-130
CI=1.69


[131-156]:
1q1aa_PU_131-156
CI=1.37


[157-177]:
1q1aa_PU_157-177
CI=0.90


[178-209]:
1q1aa_PU_178-209
CI=0.23


[210-234]:
1q1aa_PU_210-234
CI=0.52


[235-262]:
1q1aa_PU_235-262
CI=2.37


[263-285 ]:
1q1aa_PU_263-285
CI=0.08