Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-100]:
1q2ya_PU0_1-100
CI=3.57


[101-140 ]:
1q2ya_PU0_101-140
CI=3.70


Level 1
PU
Molecule needs Java 1.4 Structure


[1-19]:
1q2ya_PU1_1-19
CI=0.48


[20-37]:
1q2ya_PU1_20-37
CI=1.11


[38-100]:
1q2ya_PU1_38-100
CI=2.96


[101-140 ]:
1q2ya_PU1_101-140
CI=3.70


Level 2
PU
Molecule needs Java 1.4 Structure


[1-19]:
1q2ya_PU2_1-19
CI=0.48


[20-37]:
1q2ya_PU2_20-37
CI=1.11


[38-72]:
1q2ya_PU2_38-72
CI=2.75


[73-100]:
1q2ya_PU2_73-100
CI=0.20


[101-140 ]:
1q2ya_PU2_101-140
CI=3.70


Level 3
PU
Molecule needs Java 1.4 Structure


[1-19]:
1q2ya_PU3_1-19
CI=0.48


[20-37]:
1q2ya_PU3_20-37
CI=1.11


[38-56]:
1q2ya_PU3_38-56
CI=1.19


[57-72]:
1q2ya_PU3_57-72
CI=2.20


[73-100]:
1q2ya_PU3_73-100
CI=0.20


[101-140 ]:
1q2ya_PU3_101-140
CI=3.70


Final level 4

PU
Molecule needs Java 1.4 Structure


[1-19]:
1q2ya_PU_1-19
CI=0.48


[20-37]:
1q2ya_PU_20-37
CI=1.11


[38-56]:
1q2ya_PU_38-56
CI=1.19


[57-72]:
1q2ya_PU_57-72
CI=2.20


[73-100]:
1q2ya_PU_73-100
CI=0.20


[101-120]:
1q2ya_PU_101-120
CI=0.54


[121-140 ]:
1q2ya_PU_121-140
CI=2.31