Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-109]:
1q33a_PU0_1-109
CI=2.72


[110-287 ]:
1q33a_PU0_110-287
CI=4.11


Level 1
PU
Molecule needs Java 1.4 Structure


[1-56]:
1q33a_PU1_1-56
CI=1.11


[57-92]:
1q33a_PU1_57-92
CI=1.63


[93-109]:
1q33a_PU1_93-109
CI=0.11


[110-287 ]:
1q33a_PU1_110-287
CI=4.11


Level 2
PU
Molecule needs Java 1.4 Structure


[1-37]:
1q33a_PU2_1-37
CI=0.90


[38-56]:
1q33a_PU2_38-56
CI=0.77


[57-92]:
1q33a_PU2_57-92
CI=1.63


[93-109]:
1q33a_PU2_93-109
CI=0.11


[110-287 ]:
1q33a_PU2_110-287
CI=4.11


Level 3
PU
Molecule needs Java 1.4 Structure


[1-21]:
1q33a_PU3_1-21
CI=0.96


[22-37]:
1q33a_PU3_22-37
CI=0.22


[38-56]:
1q33a_PU3_38-56
CI=0.77


[57-92]:
1q33a_PU3_57-92
CI=1.63


[93-109]:
1q33a_PU3_93-109
CI=0.11


[110-287 ]:
1q33a_PU3_110-287
CI=4.11


Level 4
PU
Molecule needs Java 1.4 Structure


[1-21]:
1q33a_PU4_1-21
CI=0.96


[22-37]:
1q33a_PU4_22-37
CI=0.22


[38-56]:
1q33a_PU4_38-56
CI=0.77


[57-92]:
1q33a_PU4_57-92
CI=1.63


[93-109]:
1q33a_PU4_93-109
CI=0.11


[110-156]:
1q33a_PU4_110-156
CI=2.79


[157-198]:
1q33a_PU4_157-198
CI=0.76


[199-287 ]:
1q33a_PU4_199-287
CI=1.81


Level 5
PU
Molecule needs Java 1.4 Structure


[1-21]:
1q33a_PU5_1-21
CI=0.96


[22-37]:
1q33a_PU5_22-37
CI=0.22


[38-56]:
1q33a_PU5_38-56
CI=0.77


[57-92]:
1q33a_PU5_57-92
CI=1.63


[93-109]:
1q33a_PU5_93-109
CI=0.11


[110-156]:
1q33a_PU5_110-156
CI=2.79


[157-198]:
1q33a_PU5_157-198
CI=0.76


[199-231]:
1q33a_PU5_199-231
CI=2.32


[232-248]:
1q33a_PU5_232-248
CI=0.76


[249-287 ]:
1q33a_PU5_249-287
CI=0.92


Level 6
PU
Molecule needs Java 1.4 Structure


[1-21]:
1q33a_PU6_1-21
CI=0.96


[22-37]:
1q33a_PU6_22-37
CI=0.22


[38-56]:
1q33a_PU6_38-56
CI=0.77


[57-92]:
1q33a_PU6_57-92
CI=1.63


[93-109]:
1q33a_PU6_93-109
CI=0.11


[110-156]:
1q33a_PU6_110-156
CI=2.79


[157-177]:
1q33a_PU6_157-177
CI=0.27


[178-198]:
1q33a_PU6_178-198
CI=0.43


[199-231]:
1q33a_PU6_199-231
CI=2.32


[232-248]:
1q33a_PU6_232-248
CI=0.76


[249-287 ]:
1q33a_PU6_249-287
CI=0.92


Level 7
PU
Molecule needs Java 1.4 Structure


[1-21]:
1q33a_PU7_1-21
CI=0.96


[22-37]:
1q33a_PU7_22-37
CI=0.22


[38-56]:
1q33a_PU7_38-56
CI=0.77


[57-76]:
1q33a_PU7_57-76
CI=1.02


[77-92]:
1q33a_PU7_77-92
CI=1.04


[93-109]:
1q33a_PU7_93-109
CI=0.11


[110-156]:
1q33a_PU7_110-156
CI=2.79


[157-177]:
1q33a_PU7_157-177
CI=0.27


[178-198]:
1q33a_PU7_178-198
CI=0.43


[199-231]:
1q33a_PU7_199-231
CI=2.32


[232-248]:
1q33a_PU7_232-248
CI=0.76


[249-287 ]:
1q33a_PU7_249-287
CI=0.92


Level 8
PU
Molecule needs Java 1.4 Structure


[1-21]:
1q33a_PU8_1-21
CI=0.96


[22-37]:
1q33a_PU8_22-37
CI=0.22


[38-56]:
1q33a_PU8_38-56
CI=0.77


[57-76]:
1q33a_PU8_57-76
CI=1.02


[77-92]:
1q33a_PU8_77-92
CI=1.04


[93-109]:
1q33a_PU8_93-109
CI=0.11


[110-137]:
1q33a_PU8_110-137
CI=1.29


[138-156]:
1q33a_PU8_138-156
CI=1.76


[157-177]:
1q33a_PU8_157-177
CI=0.27


[178-198]:
1q33a_PU8_178-198
CI=0.43


[199-231]:
1q33a_PU8_199-231
CI=2.32


[232-248]:
1q33a_PU8_232-248
CI=0.76


[249-287 ]:
1q33a_PU8_249-287
CI=0.92


Level 9
PU
Molecule needs Java 1.4 Structure


[1-21]:
1q33a_PU9_1-21
CI=0.96


[22-37]:
1q33a_PU9_22-37
CI=0.22


[38-56]:
1q33a_PU9_38-56
CI=0.77


[57-76]:
1q33a_PU9_57-76
CI=1.02


[77-92]:
1q33a_PU9_77-92
CI=1.04


[93-109]:
1q33a_PU9_93-109
CI=0.11


[110-137]:
1q33a_PU9_110-137
CI=1.29


[138-156]:
1q33a_PU9_138-156
CI=1.76


[157-177]:
1q33a_PU9_157-177
CI=0.27


[178-198]:
1q33a_PU9_178-198
CI=0.43


[199-231]:
1q33a_PU9_199-231
CI=2.32


[232-248]:
1q33a_PU9_232-248
CI=0.76


[249-268]:
1q33a_PU9_249-268
CI=0.37


[269-287 ]:
1q33a_PU9_269-287
CI=0.28


Final level 10

PU
Molecule needs Java 1.4 Structure


[1-21]:
1q33a_PU_1-21
CI=0.96


[22-37]:
1q33a_PU_22-37
CI=0.22


[38-56]:
1q33a_PU_38-56
CI=0.77


[57-76]:
1q33a_PU_57-76
CI=1.02


[77-92]:
1q33a_PU_77-92
CI=1.04


[93-109]:
1q33a_PU_93-109
CI=0.11


[110-137]:
1q33a_PU_110-137
CI=1.29


[138-156]:
1q33a_PU_138-156
CI=1.76


[157-177]:
1q33a_PU_157-177
CI=0.27


[178-198]:
1q33a_PU_178-198
CI=0.43


[199-215]:
1q33a_PU_199-215
CI=0.00


[216-231]:
1q33a_PU_216-231
CI=0.00


[232-248]:
1q33a_PU_232-248
CI=0.76


[249-268]:
1q33a_PU_249-268
CI=0.37


[269-287 ]:
1q33a_PU_269-287
CI=0.28