Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-100]:
1q35a_PU0_1-100
CI=2.15


[101-227]:
1q35a_PU0_101-227
CI=3.67


[228-317 ]:
1q35a_PU0_228-317
CI=1.02


Level 1
PU
Molecule needs Java 1.4 Structure


[1-100]:
1q35a_PU1_1-100
CI=2.15


[101-227]:
1q35a_PU1_101-227
CI=3.67


[228-290]:
1q35a_PU1_228-290
CI=1.39


[291-317 ]:
1q35a_PU1_291-317
CI=0.00


Level 2
PU
Molecule needs Java 1.4 Structure


[1-71]:
1q35a_PU2_1-71
CI=2.23


[72-100]:
1q35a_PU2_72-100
CI=1.49


[101-227]:
1q35a_PU2_101-227
CI=3.67


[228-290]:
1q35a_PU2_228-290
CI=1.39


[291-317 ]:
1q35a_PU2_291-317
CI=0.00


Level 3
PU
Molecule needs Java 1.4 Structure


[1-71]:
1q35a_PU3_1-71
CI=2.23


[72-100]:
1q35a_PU3_72-100
CI=1.49


[101-227]:
1q35a_PU3_101-227
CI=3.67


[228-250]:
1q35a_PU3_228-250
CI=0.47


[251-290]:
1q35a_PU3_251-290
CI=1.80


[291-317 ]:
1q35a_PU3_291-317
CI=0.00


Level 4
PU
Molecule needs Java 1.4 Structure


[1-71]:
1q35a_PU4_1-71
CI=2.23


[72-100]:
1q35a_PU4_72-100
CI=1.49


[101-136]:
1q35a_PU4_101-136
CI=0.26


[137-163]:
1q35a_PU4_137-163
CI=0.48


[164-227]:
1q35a_PU4_164-227
CI=1.70


[228-250]:
1q35a_PU4_228-250
CI=0.47


[251-290]:
1q35a_PU4_251-290
CI=1.80


[291-317 ]:
1q35a_PU4_291-317
CI=0.00


Level 5
PU
Molecule needs Java 1.4 Structure


[1-71]:
1q35a_PU5_1-71
CI=2.23


[72-100]:
1q35a_PU5_72-100
CI=1.49


[101-118]:
1q35a_PU5_101-118
CI=0.31


[119-136]:
1q35a_PU5_119-136
CI=0.20


[137-163]:
1q35a_PU5_137-163
CI=0.48


[164-227]:
1q35a_PU5_164-227
CI=1.70


[228-250]:
1q35a_PU5_228-250
CI=0.47


[251-290]:
1q35a_PU5_251-290
CI=1.80


[291-317 ]:
1q35a_PU5_291-317
CI=0.00


Level 6
PU
Molecule needs Java 1.4 Structure


[1-36]:
1q35a_PU6_1-36
CI=1.96


[37-71]:
1q35a_PU6_37-71
CI=0.80


[72-100]:
1q35a_PU6_72-100
CI=1.49


[101-118]:
1q35a_PU6_101-118
CI=0.31


[119-136]:
1q35a_PU6_119-136
CI=0.20


[137-163]:
1q35a_PU6_137-163
CI=0.48


[164-227]:
1q35a_PU6_164-227
CI=1.70


[228-250]:
1q35a_PU6_228-250
CI=0.47


[251-290]:
1q35a_PU6_251-290
CI=1.80


[291-317 ]:
1q35a_PU6_291-317
CI=0.00


Level 7
PU
Molecule needs Java 1.4 Structure


[1-36]:
1q35a_PU7_1-36
CI=1.96


[37-71]:
1q35a_PU7_37-71
CI=0.80


[72-100]:
1q35a_PU7_72-100
CI=1.49


[101-118]:
1q35a_PU7_101-118
CI=0.31


[119-136]:
1q35a_PU7_119-136
CI=0.20


[137-163]:
1q35a_PU7_137-163
CI=0.48


[164-195]:
1q35a_PU7_164-195
CI=1.11


[196-227]:
1q35a_PU7_196-227
CI=1.11


[228-250]:
1q35a_PU7_228-250
CI=0.47


[251-290]:
1q35a_PU7_251-290
CI=1.80


[291-317 ]:
1q35a_PU7_291-317
CI=0.00


Level 8
PU
Molecule needs Java 1.4 Structure


[1-36]:
1q35a_PU8_1-36
CI=1.96


[37-71]:
1q35a_PU8_37-71
CI=0.80


[72-100]:
1q35a_PU8_72-100
CI=1.49


[101-118]:
1q35a_PU8_101-118
CI=0.31


[119-136]:
1q35a_PU8_119-136
CI=0.20


[137-163]:
1q35a_PU8_137-163
CI=0.48


[164-195]:
1q35a_PU8_164-195
CI=1.11


[196-227]:
1q35a_PU8_196-227
CI=1.11


[228-250]:
1q35a_PU8_228-250
CI=0.47


[251-274]:
1q35a_PU8_251-274
CI=1.56


[275-290]:
1q35a_PU8_275-290
CI=0.00


[291-317 ]:
1q35a_PU8_291-317
CI=0.00


Final level 9

PU
Molecule needs Java 1.4 Structure


[1-18]:
1q35a_PU_1-18
CI=0.00


[19-36]:
1q35a_PU_19-36
CI=0.41


[37-71]:
1q35a_PU_37-71
CI=0.80


[72-100]:
1q35a_PU_72-100
CI=1.49


[101-118]:
1q35a_PU_101-118
CI=0.31


[119-136]:
1q35a_PU_119-136
CI=0.20


[137-163]:
1q35a_PU_137-163
CI=0.48


[164-195]:
1q35a_PU_164-195
CI=1.11


[196-227]:
1q35a_PU_196-227
CI=1.11


[228-250]:
1q35a_PU_228-250
CI=0.47


[251-274]:
1q35a_PU_251-274
CI=1.56


[275-290]:
1q35a_PU_275-290
CI=0.00


[291-317 ]:
1q35a_PU_291-317
CI=0.00