Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-47]:
1q44a_PU0_1-47
CI=1.91


[48-284 ]:
1q44a_PU0_48-284
CI=2.77


Level 1
PU
Molecule needs Java 1.4 Structure


[1-47]:
1q44a_PU1_1-47
CI=1.91


[48-155]:
1q44a_PU1_48-155
CI=3.04


[156-284 ]:
1q44a_PU1_156-284
CI=1.38


Level 2
PU
Molecule needs Java 1.4 Structure


[1-47]:
1q44a_PU2_1-47
CI=1.91


[48-155]:
1q44a_PU2_48-155
CI=3.04


[156-198]:
1q44a_PU2_156-198
CI=0.78


[199-254]:
1q44a_PU2_199-254
CI=1.11


[255-284 ]:
1q44a_PU2_255-284
CI=0.06


Level 3
PU
Molecule needs Java 1.4 Structure


[1-47]:
1q44a_PU3_1-47
CI=1.91


[48-73]:
1q44a_PU3_48-73
CI=0.07


[74-108]:
1q44a_PU3_74-108
CI=1.49


[109-155]:
1q44a_PU3_109-155
CI=0.77


[156-198]:
1q44a_PU3_156-198
CI=0.78


[199-254]:
1q44a_PU3_199-254
CI=1.11


[255-284 ]:
1q44a_PU3_255-284
CI=0.06


Level 4
PU
Molecule needs Java 1.4 Structure


[1-47]:
1q44a_PU4_1-47
CI=1.91


[48-73]:
1q44a_PU4_48-73
CI=0.07


[74-108]:
1q44a_PU4_74-108
CI=1.49


[109-135]:
1q44a_PU4_109-135
CI=1.19


[136-155]:
1q44a_PU4_136-155
CI=0.09


[156-198]:
1q44a_PU4_156-198
CI=0.78


[199-254]:
1q44a_PU4_199-254
CI=1.11


[255-284 ]:
1q44a_PU4_255-284
CI=0.06


Level 5
PU
Molecule needs Java 1.4 Structure


[1-47]:
1q44a_PU5_1-47
CI=1.91


[48-73]:
1q44a_PU5_48-73
CI=0.07


[74-108]:
1q44a_PU5_74-108
CI=1.49


[109-135]:
1q44a_PU5_109-135
CI=1.19


[136-155]:
1q44a_PU5_136-155
CI=0.09


[156-198]:
1q44a_PU5_156-198
CI=0.78


[199-215]:
1q44a_PU5_199-215
CI=1.39


[216-254]:
1q44a_PU5_216-254
CI=0.63


[255-284 ]:
1q44a_PU5_255-284
CI=0.06


Level 6
PU
Molecule needs Java 1.4 Structure


[1-47]:
1q44a_PU6_1-47
CI=1.91


[48-73]:
1q44a_PU6_48-73
CI=0.07


[74-108]:
1q44a_PU6_74-108
CI=1.49


[109-135]:
1q44a_PU6_109-135
CI=1.19


[136-155]:
1q44a_PU6_136-155
CI=0.09


[156-173]:
1q44a_PU6_156-173
CI=0.00


[174-198]:
1q44a_PU6_174-198
CI=0.82


[199-215]:
1q44a_PU6_199-215
CI=1.39


[216-254]:
1q44a_PU6_216-254
CI=0.63


[255-284 ]:
1q44a_PU6_255-284
CI=0.06


Level 7
PU
Molecule needs Java 1.4 Structure


[1-21]:
1q44a_PU7_1-21
CI=0.53


[22-47]:
1q44a_PU7_22-47
CI=2.48


[48-73]:
1q44a_PU7_48-73
CI=0.07


[74-108]:
1q44a_PU7_74-108
CI=1.49


[109-135]:
1q44a_PU7_109-135
CI=1.19


[136-155]:
1q44a_PU7_136-155
CI=0.09


[156-173]:
1q44a_PU7_156-173
CI=0.00


[174-198]:
1q44a_PU7_174-198
CI=0.82


[199-215]:
1q44a_PU7_199-215
CI=1.39


[216-254]:
1q44a_PU7_216-254
CI=0.63


[255-284 ]:
1q44a_PU7_255-284
CI=0.06


Final level 8

PU
Molecule needs Java 1.4 Structure


[1-21]:
1q44a_PU_1-21
CI=0.53


[22-47]:
1q44a_PU_22-47
CI=2.48


[48-73]:
1q44a_PU_48-73
CI=0.07


[74-108]:
1q44a_PU_74-108
CI=1.49


[109-135]:
1q44a_PU_109-135
CI=1.19


[136-155]:
1q44a_PU_136-155
CI=0.09


[156-173]:
1q44a_PU_156-173
CI=0.00


[174-198]:
1q44a_PU_174-198
CI=0.82


[199-215]:
1q44a_PU_199-215
CI=1.39


[216-238]:
1q44a_PU_216-238
CI=0.40


[239-254]:
1q44a_PU_239-254
CI=0.00


[255-284 ]:
1q44a_PU_255-284
CI=0.06