Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-25]:
1q4ra_PU0_1-25
CI=0.07


[26-80]:
1q4ra_PU0_26-80
CI=1.99


[81-102 ]:
1q4ra_PU0_81-102
CI=0.00


Level 1
PU
Molecule needs Java 1.4 Structure


[1-25]:
1q4ra_PU1_1-25
CI=0.07


[26-61]:
1q4ra_PU1_26-61
CI=1.96


[62-80]:
1q4ra_PU1_62-80
CI=0.20


[81-102 ]:
1q4ra_PU1_81-102
CI=0.00


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-25]:
1q4ra_PU_1-25
CI=0.07


[26-42]:
1q4ra_PU_26-42
CI=0.64


[43-61]:
1q4ra_PU_43-61
CI=0.48


[62-80]:
1q4ra_PU_62-80
CI=0.20


[81-102 ]:
1q4ra_PU_81-102
CI=0.00