Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-25]:
1q4ua_PU0_1-25
CI=0.82


[26-140 ]:
1q4ua_PU0_26-140
CI=5.38


Level 1
PU
Molecule needs Java 1.4 Structure


[1-25]:
1q4ua_PU1_1-25
CI=0.82


[26-41]:
1q4ua_PU1_26-41
CI=2.55


[42-57]:
1q4ua_PU1_42-57
CI=1.04


[58-140 ]:
1q4ua_PU1_58-140
CI=4.90


Level 2
PU
Molecule needs Java 1.4 Structure


[1-25]:
1q4ua_PU2_1-25
CI=0.82


[26-41]:
1q4ua_PU2_26-41
CI=2.55


[42-57]:
1q4ua_PU2_42-57
CI=1.04


[58-87]:
1q4ua_PU2_58-87
CI=1.13


[88-131]:
1q4ua_PU2_88-131
CI=3.93


[132-140 ]:
1q4ua_PU2_132-140
CI=0.00


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-25]:
1q4ua_PU_1-25
CI=0.82


[26-41]:
1q4ua_PU_26-41
CI=2.55


[42-57]:
1q4ua_PU_42-57
CI=1.04


[58-87]:
1q4ua_PU_58-87
CI=1.13


[88-104]:
1q4ua_PU_88-104
CI=0.00


[105-131]:
1q4ua_PU_105-131
CI=2.61


[132-140 ]:
1q4ua_PU_132-140
CI=0.00