Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-240]:
1q52a_PU0_1-240
CI=4.45


[241-269 ]:
1q52a_PU0_241-269
CI=1.15


Level 1
PU
Molecule needs Java 1.4 Structure


[1-207]:
1q52a_PU1_1-207
CI=4.71


[208-240]:
1q52a_PU1_208-240
CI=1.26


[241-269 ]:
1q52a_PU1_241-269
CI=1.15


Level 2
PU
Molecule needs Java 1.4 Structure


[1-137]:
1q52a_PU2_1-137
CI=4.76


[138-171]:
1q52a_PU2_138-171
CI=1.10


[172-207]:
1q52a_PU2_172-207
CI=0.67


[208-240]:
1q52a_PU2_208-240
CI=1.26


[241-269 ]:
1q52a_PU2_241-269
CI=1.15


Level 3
PU
Molecule needs Java 1.4 Structure


[1-137]:
1q52a_PU3_1-137
CI=4.76


[138-171]:
1q52a_PU3_138-171
CI=1.10


[172-188]:
1q52a_PU3_172-188
CI=1.07


[189-207]:
1q52a_PU3_189-207
CI=0.19


[208-240]:
1q52a_PU3_208-240
CI=1.26


[241-269 ]:
1q52a_PU3_241-269
CI=1.15


Level 4
PU
Molecule needs Java 1.4 Structure


[1-34]:
1q52a_PU4_1-34
CI=2.08


[35-137]:
1q52a_PU4_35-137
CI=4.62


[138-171]:
1q52a_PU4_138-171
CI=1.10


[172-188]:
1q52a_PU4_172-188
CI=1.07


[189-207]:
1q52a_PU4_189-207
CI=0.19


[208-240]:
1q52a_PU4_208-240
CI=1.26


[241-269 ]:
1q52a_PU4_241-269
CI=1.15


Level 5
PU
Molecule needs Java 1.4 Structure


[1-34]:
1q52a_PU5_1-34
CI=2.08


[35-50]:
1q52a_PU5_35-50
CI=0.67


[51-71]:
1q52a_PU5_51-71
CI=0.18


[72-137]:
1q52a_PU5_72-137
CI=4.23


[138-171]:
1q52a_PU5_138-171
CI=1.10


[172-188]:
1q52a_PU5_172-188
CI=1.07


[189-207]:
1q52a_PU5_189-207
CI=0.19


[208-240]:
1q52a_PU5_208-240
CI=1.26


[241-269 ]:
1q52a_PU5_241-269
CI=1.15


Level 6
PU
Molecule needs Java 1.4 Structure


[1-34]:
1q52a_PU6_1-34
CI=2.08


[35-50]:
1q52a_PU6_35-50
CI=0.67


[51-71]:
1q52a_PU6_51-71
CI=0.18


[72-89]:
1q52a_PU6_72-89
CI=1.64


[90-108]:
1q52a_PU6_90-108
CI=0.19


[109-137]:
1q52a_PU6_109-137
CI=2.66


[138-171]:
1q52a_PU6_138-171
CI=1.10


[172-188]:
1q52a_PU6_172-188
CI=1.07


[189-207]:
1q52a_PU6_189-207
CI=0.19


[208-240]:
1q52a_PU6_208-240
CI=1.26


[241-269 ]:
1q52a_PU6_241-269
CI=1.15


Level 7
PU
Molecule needs Java 1.4 Structure


[1-34]:
1q52a_PU7_1-34
CI=2.08


[35-50]:
1q52a_PU7_35-50
CI=0.67


[51-71]:
1q52a_PU7_51-71
CI=0.18


[72-89]:
1q52a_PU7_72-89
CI=1.64


[90-108]:
1q52a_PU7_90-108
CI=0.19


[109-137]:
1q52a_PU7_109-137
CI=2.66


[138-171]:
1q52a_PU7_138-171
CI=1.10


[172-188]:
1q52a_PU7_172-188
CI=1.07


[189-207]:
1q52a_PU7_189-207
CI=0.19


[208-224]:
1q52a_PU7_208-224
CI=0.00


[225-240]:
1q52a_PU7_225-240
CI=0.00


[241-269 ]:
1q52a_PU7_241-269
CI=1.15


Final level 8

PU
Molecule needs Java 1.4 Structure


[1-17]:
1q52a_PU_1-17
CI=0.00


[18-34]:
1q52a_PU_18-34
CI=1.96


[35-50]:
1q52a_PU_35-50
CI=0.67


[51-71]:
1q52a_PU_51-71
CI=0.18


[72-89]:
1q52a_PU_72-89
CI=1.64


[90-108]:
1q52a_PU_90-108
CI=0.19


[109-137]:
1q52a_PU_109-137
CI=2.66


[138-171]:
1q52a_PU_138-171
CI=1.10


[172-188]:
1q52a_PU_172-188
CI=1.07


[189-207]:
1q52a_PU_189-207
CI=0.19


[208-224]:
1q52a_PU_208-224
CI=0.00


[225-240]:
1q52a_PU_225-240
CI=0.00


[241-269 ]:
1q52a_PU_241-269
CI=1.15