Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-166]:
1q74a_PU0_1-166
CI=3.95


[167-287 ]:
1q74a_PU0_167-287
CI=3.42


Level 1
PU
Molecule needs Java 1.4 Structure


[1-106]:
1q74a_PU1_1-106
CI=3.66


[107-166]:
1q74a_PU1_107-166
CI=2.58


[167-287 ]:
1q74a_PU1_167-287
CI=3.42


Level 2
PU
Molecule needs Java 1.4 Structure


[1-106]:
1q74a_PU2_1-106
CI=3.66


[107-125]:
1q74a_PU2_107-125
CI=0.00


[126-146]:
1q74a_PU2_126-146
CI=2.12


[147-166]:
1q74a_PU2_147-166
CI=1.02


[167-287 ]:
1q74a_PU2_167-287
CI=3.42


Level 3
PU
Molecule needs Java 1.4 Structure


[1-44]:
1q74a_PU3_1-44
CI=2.39


[45-62]:
1q74a_PU3_45-62
CI=1.34


[63-106]:
1q74a_PU3_63-106
CI=1.41


[107-125]:
1q74a_PU3_107-125
CI=0.00


[126-146]:
1q74a_PU3_126-146
CI=2.12


[147-166]:
1q74a_PU3_147-166
CI=1.02


[167-287 ]:
1q74a_PU3_167-287
CI=3.42


Level 4
PU
Molecule needs Java 1.4 Structure


[1-44]:
1q74a_PU4_1-44
CI=2.39


[45-62]:
1q74a_PU4_45-62
CI=1.34


[63-83]:
1q74a_PU4_63-83
CI=0.96


[84-106]:
1q74a_PU4_84-106
CI=1.54


[107-125]:
1q74a_PU4_107-125
CI=0.00


[126-146]:
1q74a_PU4_126-146
CI=2.12


[147-166]:
1q74a_PU4_147-166
CI=1.02


[167-287 ]:
1q74a_PU4_167-287
CI=3.42


Level 5
PU
Molecule needs Java 1.4 Structure


[1-44]:
1q74a_PU5_1-44
CI=2.39


[45-62]:
1q74a_PU5_45-62
CI=1.34


[63-83]:
1q74a_PU5_63-83
CI=0.96


[84-106]:
1q74a_PU5_84-106
CI=1.54


[107-125]:
1q74a_PU5_107-125
CI=0.00


[126-146]:
1q74a_PU5_126-146
CI=2.12


[147-166]:
1q74a_PU5_147-166
CI=1.02


[167-266]:
1q74a_PU5_167-266
CI=3.25


[267-287 ]:
1q74a_PU5_267-287
CI=1.51


Level 6
PU
Molecule needs Java 1.4 Structure


[1-44]:
1q74a_PU6_1-44
CI=2.39


[45-62]:
1q74a_PU6_45-62
CI=1.34


[63-83]:
1q74a_PU6_63-83
CI=0.96


[84-106]:
1q74a_PU6_84-106
CI=1.54


[107-125]:
1q74a_PU6_107-125
CI=0.00


[126-146]:
1q74a_PU6_126-146
CI=2.12


[147-166]:
1q74a_PU6_147-166
CI=1.02


[167-213]:
1q74a_PU6_167-213
CI=0.94


[214-258]:
1q74a_PU6_214-258
CI=2.56


[259-266]:
1q74a_PU6_259-266
CI=0.00


[267-287 ]:
1q74a_PU6_267-287
CI=1.51


Level 7
PU
Molecule needs Java 1.4 Structure


[1-44]:
1q74a_PU7_1-44
CI=2.39


[45-62]:
1q74a_PU7_45-62
CI=1.34


[63-83]:
1q74a_PU7_63-83
CI=0.96


[84-106]:
1q74a_PU7_84-106
CI=1.54


[107-125]:
1q74a_PU7_107-125
CI=0.00


[126-146]:
1q74a_PU7_126-146
CI=2.12


[147-166]:
1q74a_PU7_147-166
CI=1.02


[167-196]:
1q74a_PU7_167-196
CI=0.06


[197-213]:
1q74a_PU7_197-213
CI=0.11


[214-258]:
1q74a_PU7_214-258
CI=2.56


[259-266]:
1q74a_PU7_259-266
CI=0.00


[267-287 ]:
1q74a_PU7_267-287
CI=1.51


Level 8
PU
Molecule needs Java 1.4 Structure


[1-44]:
1q74a_PU8_1-44
CI=2.39


[45-62]:
1q74a_PU8_45-62
CI=1.34


[63-83]:
1q74a_PU8_63-83
CI=0.96


[84-106]:
1q74a_PU8_84-106
CI=1.54


[107-125]:
1q74a_PU8_107-125
CI=0.00


[126-146]:
1q74a_PU8_126-146
CI=2.12


[147-166]:
1q74a_PU8_147-166
CI=1.02


[167-196]:
1q74a_PU8_167-196
CI=0.06


[197-213]:
1q74a_PU8_197-213
CI=0.11


[214-231]:
1q74a_PU8_214-231
CI=0.00


[232-258]:
1q74a_PU8_232-258
CI=2.31


[259-266]:
1q74a_PU8_259-266
CI=0.00


[267-287 ]:
1q74a_PU8_267-287
CI=1.51


Final level 9

PU
Molecule needs Java 1.4 Structure


[1-20]:
1q74a_PU_1-20
CI=0.37


[21-44]:
1q74a_PU_21-44
CI=0.31


[45-62]:
1q74a_PU_45-62
CI=1.34


[63-83]:
1q74a_PU_63-83
CI=0.96


[84-106]:
1q74a_PU_84-106
CI=1.54


[107-125]:
1q74a_PU_107-125
CI=0.00


[126-146]:
1q74a_PU_126-146
CI=2.12


[147-166]:
1q74a_PU_147-166
CI=1.02


[167-196]:
1q74a_PU_167-196
CI=0.06


[197-213]:
1q74a_PU_197-213
CI=0.11


[214-231]:
1q74a_PU_214-231
CI=0.00


[232-258]:
1q74a_PU_232-258
CI=2.31


[259-266]:
1q74a_PU_259-266
CI=0.00


[267-287 ]:
1q74a_PU_267-287
CI=1.51