Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-114]:
1q7fa_PU0_1-114
CI=4.77


[115-242]:
1q7fa_PU0_115-242
CI=5.54


[243-279 ]:
1q7fa_PU0_243-279
CI=3.16


Level 1
PU
Molecule needs Java 1.4 Structure


[1-114]:
1q7fa_PU1_1-114
CI=4.77


[115-192]:
1q7fa_PU1_115-192
CI=4.99


[193-242]:
1q7fa_PU1_193-242
CI=4.04


[243-279 ]:
1q7fa_PU1_243-279
CI=3.16


Level 2
PU
Molecule needs Java 1.4 Structure


[1-58]:
1q7fa_PU2_1-58
CI=3.36


[59-114]:
1q7fa_PU2_59-114
CI=3.93


[115-192]:
1q7fa_PU2_115-192
CI=4.99


[193-242]:
1q7fa_PU2_193-242
CI=4.04


[243-279 ]:
1q7fa_PU2_243-279
CI=3.16


Level 3
PU
Molecule needs Java 1.4 Structure


[1-23]:
1q7fa_PU3_1-23
CI=0.98


[24-58]:
1q7fa_PU3_24-58
CI=3.61


[59-114]:
1q7fa_PU3_59-114
CI=3.93


[115-192]:
1q7fa_PU3_115-192
CI=4.99


[193-242]:
1q7fa_PU3_193-242
CI=4.04


[243-279 ]:
1q7fa_PU3_243-279
CI=3.16


Level 4
PU
Molecule needs Java 1.4 Structure


[1-23]:
1q7fa_PU4_1-23
CI=0.98


[24-58]:
1q7fa_PU4_24-58
CI=3.61


[59-114]:
1q7fa_PU4_59-114
CI=3.93


[115-154]:
1q7fa_PU4_115-154
CI=3.66


[155-192]:
1q7fa_PU4_155-192
CI=3.58


[193-242]:
1q7fa_PU4_193-242
CI=4.04


[243-279 ]:
1q7fa_PU4_243-279
CI=3.16


Level 5
PU
Molecule needs Java 1.4 Structure


[1-23]:
1q7fa_PU5_1-23
CI=0.98


[24-58]:
1q7fa_PU5_24-58
CI=3.61


[59-77]:
1q7fa_PU5_59-77
CI=1.29


[78-114]:
1q7fa_PU5_78-114
CI=3.30


[115-154]:
1q7fa_PU5_115-154
CI=3.66


[155-192]:
1q7fa_PU5_155-192
CI=3.58


[193-242]:
1q7fa_PU5_193-242
CI=4.04


[243-279 ]:
1q7fa_PU5_243-279
CI=3.16


Level 6
PU
Molecule needs Java 1.4 Structure


[1-23]:
1q7fa_PU6_1-23
CI=0.98


[24-58]:
1q7fa_PU6_24-58
CI=3.61


[59-77]:
1q7fa_PU6_59-77
CI=1.29


[78-114]:
1q7fa_PU6_78-114
CI=3.30


[115-133]:
1q7fa_PU6_115-133
CI=2.47


[134-154]:
1q7fa_PU6_134-154
CI=2.51


[155-192]:
1q7fa_PU6_155-192
CI=3.58


[193-242]:
1q7fa_PU6_193-242
CI=4.04


[243-279 ]:
1q7fa_PU6_243-279
CI=3.16


Level 7
PU
Molecule needs Java 1.4 Structure


[1-23]:
1q7fa_PU7_1-23
CI=0.98


[24-58]:
1q7fa_PU7_24-58
CI=3.61


[59-77]:
1q7fa_PU7_59-77
CI=1.29


[78-114]:
1q7fa_PU7_78-114
CI=3.30


[115-133]:
1q7fa_PU7_115-133
CI=2.47


[134-154]:
1q7fa_PU7_134-154
CI=2.51


[155-192]:
1q7fa_PU7_155-192
CI=3.58


[193-217]:
1q7fa_PU7_193-217
CI=2.04


[218-242]:
1q7fa_PU7_218-242
CI=2.64


[243-279 ]:
1q7fa_PU7_243-279
CI=3.16


Level 8
PU
Molecule needs Java 1.4 Structure


[1-23]:
1q7fa_PU8_1-23
CI=0.98


[24-58]:
1q7fa_PU8_24-58
CI=3.61


[59-77]:
1q7fa_PU8_59-77
CI=1.29


[78-114]:
1q7fa_PU8_78-114
CI=3.30


[115-133]:
1q7fa_PU8_115-133
CI=2.47


[134-154]:
1q7fa_PU8_134-154
CI=2.51


[155-176]:
1q7fa_PU8_155-176
CI=2.49


[177-192]:
1q7fa_PU8_177-192
CI=1.50


[193-217]:
1q7fa_PU8_193-217
CI=2.04


[218-242]:
1q7fa_PU8_218-242
CI=2.64


[243-279 ]:
1q7fa_PU8_243-279
CI=3.16


Level 9
PU
Molecule needs Java 1.4 Structure


[1-23]:
1q7fa_PU9_1-23
CI=0.98


[24-42]:
1q7fa_PU9_24-42
CI=2.37


[43-58]:
1q7fa_PU9_43-58
CI=1.73


[59-77]:
1q7fa_PU9_59-77
CI=1.29


[78-114]:
1q7fa_PU9_78-114
CI=3.30


[115-133]:
1q7fa_PU9_115-133
CI=2.47


[134-154]:
1q7fa_PU9_134-154
CI=2.51


[155-176]:
1q7fa_PU9_155-176
CI=2.49


[177-192]:
1q7fa_PU9_177-192
CI=1.50


[193-217]:
1q7fa_PU9_193-217
CI=2.04


[218-242]:
1q7fa_PU9_218-242
CI=2.64


[243-279 ]:
1q7fa_PU9_243-279
CI=3.16


Level 10
PU
Molecule needs Java 1.4 Structure


[1-23]:
1q7fa_PU10_1-23
CI=0.98


[24-42]:
1q7fa_PU10_24-42
CI=2.37


[43-58]:
1q7fa_PU10_43-58
CI=1.73


[59-77]:
1q7fa_PU10_59-77
CI=1.29


[78-114]:
1q7fa_PU10_78-114
CI=3.30


[115-133]:
1q7fa_PU10_115-133
CI=2.47


[134-154]:
1q7fa_PU10_134-154
CI=2.51


[155-176]:
1q7fa_PU10_155-176
CI=2.49


[177-192]:
1q7fa_PU10_177-192
CI=1.50


[193-217]:
1q7fa_PU10_193-217
CI=2.04


[218-242]:
1q7fa_PU10_218-242
CI=2.64


[243-263]:
1q7fa_PU10_243-263
CI=2.86


[264-279 ]:
1q7fa_PU10_264-279
CI=0.00


Final level 11

PU
Molecule needs Java 1.4 Structure


[1-23]:
1q7fa_PU_1-23
CI=0.98


[24-42]:
1q7fa_PU_24-42
CI=2.37


[43-58]:
1q7fa_PU_43-58
CI=1.73


[59-77]:
1q7fa_PU_59-77
CI=1.29


[78-97]:
1q7fa_PU_78-97
CI=1.69


[98-114]:
1q7fa_PU_98-114
CI=0.53


[115-133]:
1q7fa_PU_115-133
CI=2.47


[134-154]:
1q7fa_PU_134-154
CI=2.51


[155-176]:
1q7fa_PU_155-176
CI=2.49


[177-192]:
1q7fa_PU_177-192
CI=1.50


[193-217]:
1q7fa_PU_193-217
CI=2.04


[218-242]:
1q7fa_PU_218-242
CI=2.64


[243-263]:
1q7fa_PU_243-263
CI=2.86


[264-279 ]:
1q7fa_PU_264-279
CI=0.00