Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-19]:
1q8ba_PU0_1-19
CI=0.00


[20-76]:
1q8ba_PU0_20-76
CI=2.16


[77-89 ]:
1q8ba_PU0_77-89
CI=0.00


Level 1
PU
Molecule needs Java 1.4 Structure


[1-19]:
1q8ba_PU1_1-19
CI=0.00


[20-57]:
1q8ba_PU1_20-57
CI=2.46


[58-76]:
1q8ba_PU1_58-76
CI=0.19


[77-89 ]:
1q8ba_PU1_77-89
CI=0.00


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-19]:
1q8ba_PU_1-19
CI=0.00


[20-40]:
1q8ba_PU_20-40
CI=1.16


[41-57]:
1q8ba_PU_41-57
CI=0.66


[58-76]:
1q8ba_PU_58-76
CI=0.19


[77-89 ]:
1q8ba_PU_77-89
CI=0.00