Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-31]:
1q9ua_PU0_1-31
CI=0.35


[32-55]:
1q9ua_PU0_32-55
CI=2.05


[56-126 ]:
1q9ua_PU0_56-126
CI=1.82


Level 1
PU
Molecule needs Java 1.4 Structure


[1-31]:
1q9ua_PU1_1-31
CI=0.35


[32-55]:
1q9ua_PU1_32-55
CI=2.05


[56-77]:
1q9ua_PU1_56-77
CI=0.68


[78-126 ]:
1q9ua_PU1_78-126
CI=1.75


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-31]:
1q9ua_PU_1-31
CI=0.35


[32-55]:
1q9ua_PU_32-55
CI=2.05


[56-77]:
1q9ua_PU_56-77
CI=0.68


[78-94]:
1q9ua_PU_78-94
CI=2.08


[95-126 ]:
1q9ua_PU_95-126
CI=1.00