Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-87]:
1qaua_PU0_1-87
CI=4.88


[88-112 ]:
1qaua_PU0_88-112
CI=2.51


Level 1
PU
Molecule needs Java 1.4 Structure


[1-48]:
1qaua_PU1_1-48
CI=3.56


[49-87]:
1qaua_PU1_49-87
CI=2.11


[88-112 ]:
1qaua_PU1_88-112
CI=2.51


Level 2
PU
Molecule needs Java 1.4 Structure


[1-48]:
1qaua_PU2_1-48
CI=3.56


[49-71]:
1qaua_PU2_49-71
CI=1.21


[72-87]:
1qaua_PU2_72-87
CI=0.00


[88-112 ]:
1qaua_PU2_88-112
CI=2.51


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-32]:
1qaua_PU_1-32
CI=1.73


[33-48]:
1qaua_PU_33-48
CI=1.27


[49-71]:
1qaua_PU_49-71
CI=1.21


[72-87]:
1qaua_PU_72-87
CI=0.00


[88-112 ]:
1qaua_PU_88-112
CI=2.51