Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-49]:
1qb5d_PU0_1-49
CI=2.24


[50-65]:
1qb5d_PU0_50-65
CI=1.82


[66-99 ]:
1qb5d_PU0_66-99
CI=2.58


Level 1
PU
Molecule needs Java 1.4 Structure


[1-20]:
1qb5d_PU1_1-20
CI=0.56


[21-49]:
1qb5d_PU1_21-49
CI=3.34


[50-65]:
1qb5d_PU1_50-65
CI=1.82


[66-99 ]:
1qb5d_PU1_66-99
CI=2.58


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-20]:
1qb5d_PU_1-20
CI=0.56


[21-49]:
1qb5d_PU_21-49
CI=3.34


[50-65]:
1qb5d_PU_50-65
CI=1.82


[66-82]:
1qb5d_PU_66-82
CI=0.55


[83-99 ]:
1qb5d_PU_83-99
CI=0.54