Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-220]:
1qb7a_PU0_1-220
CI=4.03


[221-236 ]:
1qb7a_PU0_221-236
CI=0.00


Level 1
PU
Molecule needs Java 1.4 Structure


[1-60]:
1qb7a_PU1_1-60
CI=2.19


[61-173]:
1qb7a_PU1_61-173
CI=3.95


[174-220]:
1qb7a_PU1_174-220
CI=1.26


[221-236 ]:
1qb7a_PU1_221-236
CI=0.00


Level 2
PU
Molecule needs Java 1.4 Structure


[1-24]:
1qb7a_PU2_1-24
CI=1.27


[25-60]:
1qb7a_PU2_25-60
CI=2.07


[61-173]:
1qb7a_PU2_61-173
CI=3.95


[174-220]:
1qb7a_PU2_174-220
CI=1.26


[221-236 ]:
1qb7a_PU2_221-236
CI=0.00


Level 3
PU
Molecule needs Java 1.4 Structure


[1-24]:
1qb7a_PU3_1-24
CI=1.27


[25-43]:
1qb7a_PU3_25-43
CI=2.75


[44-60]:
1qb7a_PU3_44-60
CI=0.33


[61-173]:
1qb7a_PU3_61-173
CI=3.95


[174-220]:
1qb7a_PU3_174-220
CI=1.26


[221-236 ]:
1qb7a_PU3_221-236
CI=0.00


Level 4
PU
Molecule needs Java 1.4 Structure


[1-24]:
1qb7a_PU4_1-24
CI=1.27


[25-43]:
1qb7a_PU4_25-43
CI=2.75


[44-60]:
1qb7a_PU4_44-60
CI=0.33


[61-101]:
1qb7a_PU4_61-101
CI=2.51


[102-134]:
1qb7a_PU4_102-134
CI=2.48


[135-173]:
1qb7a_PU4_135-173
CI=2.79


[174-220]:
1qb7a_PU4_174-220
CI=1.26


[221-236 ]:
1qb7a_PU4_221-236
CI=0.00


Level 5
PU
Molecule needs Java 1.4 Structure


[1-24]:
1qb7a_PU5_1-24
CI=1.27


[25-43]:
1qb7a_PU5_25-43
CI=2.75


[44-60]:
1qb7a_PU5_44-60
CI=0.33


[61-101]:
1qb7a_PU5_61-101
CI=2.51


[102-134]:
1qb7a_PU5_102-134
CI=2.48


[135-173]:
1qb7a_PU5_135-173
CI=2.79


[174-197]:
1qb7a_PU5_174-197
CI=0.78


[198-220]:
1qb7a_PU5_198-220
CI=0.00


[221-236 ]:
1qb7a_PU5_221-236
CI=0.00


Level 6
PU
Molecule needs Java 1.4 Structure


[1-24]:
1qb7a_PU6_1-24
CI=1.27


[25-43]:
1qb7a_PU6_25-43
CI=2.75


[44-60]:
1qb7a_PU6_44-60
CI=0.33


[61-77]:
1qb7a_PU6_61-77
CI=0.22


[78-101]:
1qb7a_PU6_78-101
CI=1.32


[102-134]:
1qb7a_PU6_102-134
CI=2.48


[135-173]:
1qb7a_PU6_135-173
CI=2.79


[174-197]:
1qb7a_PU6_174-197
CI=0.78


[198-220]:
1qb7a_PU6_198-220
CI=0.00


[221-236 ]:
1qb7a_PU6_221-236
CI=0.00


Level 7
PU
Molecule needs Java 1.4 Structure


[1-24]:
1qb7a_PU7_1-24
CI=1.27


[25-43]:
1qb7a_PU7_25-43
CI=2.75


[44-60]:
1qb7a_PU7_44-60
CI=0.33


[61-77]:
1qb7a_PU7_61-77
CI=0.22


[78-101]:
1qb7a_PU7_78-101
CI=1.32


[102-134]:
1qb7a_PU7_102-134
CI=2.48


[135-154]:
1qb7a_PU7_135-154
CI=0.36


[155-173]:
1qb7a_PU7_155-173
CI=0.49


[174-197]:
1qb7a_PU7_174-197
CI=0.78


[198-220]:
1qb7a_PU7_198-220
CI=0.00


[221-236 ]:
1qb7a_PU7_221-236
CI=0.00


Final level 8

PU
Molecule needs Java 1.4 Structure


[1-24]:
1qb7a_PU_1-24
CI=1.27


[25-43]:
1qb7a_PU_25-43
CI=2.75


[44-60]:
1qb7a_PU_44-60
CI=0.33


[61-77]:
1qb7a_PU_61-77
CI=0.22


[78-101]:
1qb7a_PU_78-101
CI=1.32


[102-118]:
1qb7a_PU_102-118
CI=0.32


[119-134]:
1qb7a_PU_119-134
CI=0.00


[135-154]:
1qb7a_PU_135-154
CI=0.36


[155-173]:
1qb7a_PU_155-173
CI=0.49


[174-197]:
1qb7a_PU_174-197
CI=0.78


[198-220]:
1qb7a_PU_198-220
CI=0.00


[221-236 ]:
1qb7a_PU_221-236
CI=0.00