Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-179]:
1qd1a_PU0_1-179
CI=5.04


[180-319 ]:
1qd1a_PU0_180-319
CI=4.25


Level 1
PU
Molecule needs Java 1.4 Structure


[1-179]:
1qd1a_PU1_1-179
CI=5.04


[180-264]:
1qd1a_PU1_180-264
CI=4.83


[265-319 ]:
1qd1a_PU1_265-319
CI=1.74


Level 2
PU
Molecule needs Java 1.4 Structure


[1-98]:
1qd1a_PU2_1-98
CI=4.65


[99-179]:
1qd1a_PU2_99-179
CI=3.07


[180-264]:
1qd1a_PU2_180-264
CI=4.83


[265-319 ]:
1qd1a_PU2_265-319
CI=1.74


Level 3
PU
Molecule needs Java 1.4 Structure


[1-98]:
1qd1a_PU3_1-98
CI=4.65


[99-130]:
1qd1a_PU3_99-130
CI=1.16


[131-158]:
1qd1a_PU3_131-158
CI=0.34


[159-179]:
1qd1a_PU3_159-179
CI=0.00


[180-264]:
1qd1a_PU3_180-264
CI=4.83


[265-319 ]:
1qd1a_PU3_265-319
CI=1.74


Level 4
PU
Molecule needs Java 1.4 Structure


[1-98]:
1qd1a_PU4_1-98
CI=4.65


[99-130]:
1qd1a_PU4_99-130
CI=1.16


[131-158]:
1qd1a_PU4_131-158
CI=0.34


[159-179]:
1qd1a_PU4_159-179
CI=0.00


[180-264]:
1qd1a_PU4_180-264
CI=4.83


[265-300]:
1qd1a_PU4_265-300
CI=1.46


[301-319 ]:
1qd1a_PU4_301-319
CI=0.49


Level 5
PU
Molecule needs Java 1.4 Structure


[1-57]:
1qd1a_PU5_1-57
CI=4.17


[58-90]:
1qd1a_PU5_58-90
CI=0.57


[91-98]:
1qd1a_PU5_91-98
CI=0.00


[99-130]:
1qd1a_PU5_99-130
CI=1.16


[131-158]:
1qd1a_PU5_131-158
CI=0.34


[159-179]:
1qd1a_PU5_159-179
CI=0.00


[180-264]:
1qd1a_PU5_180-264
CI=4.83


[265-300]:
1qd1a_PU5_265-300
CI=1.46


[301-319 ]:
1qd1a_PU5_301-319
CI=0.49


Level 6
PU
Molecule needs Java 1.4 Structure


[1-57]:
1qd1a_PU6_1-57
CI=4.17


[58-90]:
1qd1a_PU6_58-90
CI=0.57


[91-98]:
1qd1a_PU6_91-98
CI=0.00


[99-130]:
1qd1a_PU6_99-130
CI=1.16


[131-158]:
1qd1a_PU6_131-158
CI=0.34


[159-179]:
1qd1a_PU6_159-179
CI=0.00


[180-238]:
1qd1a_PU6_180-238
CI=4.61


[239-264]:
1qd1a_PU6_239-264
CI=0.57


[265-300]:
1qd1a_PU6_265-300
CI=1.46


[301-319 ]:
1qd1a_PU6_301-319
CI=0.49


Level 7
PU
Molecule needs Java 1.4 Structure


[1-57]:
1qd1a_PU7_1-57
CI=4.17


[58-90]:
1qd1a_PU7_58-90
CI=0.57


[91-98]:
1qd1a_PU7_91-98
CI=0.00


[99-130]:
1qd1a_PU7_99-130
CI=1.16


[131-158]:
1qd1a_PU7_131-158
CI=0.34


[159-179]:
1qd1a_PU7_159-179
CI=0.00


[180-195]:
1qd1a_PU7_180-195
CI=0.33


[196-211]:
1qd1a_PU7_196-211
CI=1.29


[212-238]:
1qd1a_PU7_212-238
CI=2.25


[239-264]:
1qd1a_PU7_239-264
CI=0.57


[265-300]:
1qd1a_PU7_265-300
CI=1.46


[301-319 ]:
1qd1a_PU7_301-319
CI=0.49


Level 8
PU
Molecule needs Java 1.4 Structure


[1-57]:
1qd1a_PU8_1-57
CI=4.17


[58-90]:
1qd1a_PU8_58-90
CI=0.57


[91-98]:
1qd1a_PU8_91-98
CI=0.00


[99-130]:
1qd1a_PU8_99-130
CI=1.16


[131-158]:
1qd1a_PU8_131-158
CI=0.34


[159-179]:
1qd1a_PU8_159-179
CI=0.00


[180-195]:
1qd1a_PU8_180-195
CI=0.33


[196-211]:
1qd1a_PU8_196-211
CI=1.29


[212-238]:
1qd1a_PU8_212-238
CI=2.25


[239-264]:
1qd1a_PU8_239-264
CI=0.57


[265-284]:
1qd1a_PU8_265-284
CI=0.09


[285-300]:
1qd1a_PU8_285-300
CI=0.12


[301-319 ]:
1qd1a_PU8_301-319
CI=0.49


Final level 9

PU
Molecule needs Java 1.4 Structure


[1-16]:
1qd1a_PU_1-16
CI=0.00


[17-39]:
1qd1a_PU_17-39
CI=0.66


[40-57]:
1qd1a_PU_40-57
CI=0.30


[58-90]:
1qd1a_PU_58-90
CI=0.57


[91-98]:
1qd1a_PU_91-98
CI=0.00


[99-130]:
1qd1a_PU_99-130
CI=1.16


[131-158]:
1qd1a_PU_131-158
CI=0.34


[159-179]:
1qd1a_PU_159-179
CI=0.00


[180-195]:
1qd1a_PU_180-195
CI=0.33


[196-211]:
1qd1a_PU_196-211
CI=1.29


[212-238]:
1qd1a_PU_212-238
CI=2.25


[239-264]:
1qd1a_PU_239-264
CI=0.57


[265-284]:
1qd1a_PU_265-284
CI=0.09


[285-300]:
1qd1a_PU_285-300
CI=0.12


[301-319 ]:
1qd1a_PU_301-319
CI=0.49