Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-19]:
1qf8a_PU0_1-19
CI=0.87


[20-65]:
1qf8a_PU0_20-65
CI=1.36


[66-159 ]:
1qf8a_PU0_66-159
CI=3.47


Level 1
PU
Molecule needs Java 1.4 Structure


[1-19]:
1qf8a_PU1_1-19
CI=0.87


[20-36]:
1qf8a_PU1_20-36
CI=0.22


[37-65]:
1qf8a_PU1_37-65
CI=1.30


[66-159 ]:
1qf8a_PU1_66-159
CI=3.47


Level 2
PU
Molecule needs Java 1.4 Structure


[1-19]:
1qf8a_PU2_1-19
CI=0.87


[20-36]:
1qf8a_PU2_20-36
CI=0.22


[37-65]:
1qf8a_PU2_37-65
CI=1.30


[66-91]:
1qf8a_PU2_66-91
CI=0.29


[92-143]:
1qf8a_PU2_92-143
CI=4.14


[144-159 ]:
1qf8a_PU2_144-159
CI=0.12


Level 3
PU
Molecule needs Java 1.4 Structure


[1-19]:
1qf8a_PU3_1-19
CI=0.87


[20-36]:
1qf8a_PU3_20-36
CI=0.22


[37-65]:
1qf8a_PU3_37-65
CI=1.30


[66-91]:
1qf8a_PU3_66-91
CI=0.29


[92-127]:
1qf8a_PU3_92-127
CI=2.81


[128-143]:
1qf8a_PU3_128-143
CI=0.11


[144-159 ]:
1qf8a_PU3_144-159
CI=0.12


Final level 4

PU
Molecule needs Java 1.4 Structure


[1-19]:
1qf8a_PU_1-19
CI=0.87


[20-36]:
1qf8a_PU_20-36
CI=0.22


[37-65]:
1qf8a_PU_37-65
CI=1.30


[66-91]:
1qf8a_PU_66-91
CI=0.29


[92-108]:
1qf8a_PU_92-108
CI=1.10


[109-127]:
1qf8a_PU_109-127
CI=1.09


[128-143]:
1qf8a_PU_128-143
CI=0.11


[144-159 ]:
1qf8a_PU_144-159
CI=0.12