Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-41]:
1qgia_PU0_1-41
CI=1.57


[42-144]:
1qgia_PU0_42-144
CI=3.99


[145-259 ]:
1qgia_PU0_145-259
CI=2.41


Level 1
PU
Molecule needs Java 1.4 Structure


[1-41]:
1qgia_PU1_1-41
CI=1.57


[42-144]:
1qgia_PU1_42-144
CI=3.99


[145-210]:
1qgia_PU1_145-210
CI=2.23


[211-259 ]:
1qgia_PU1_211-259
CI=1.40


Level 2
PU
Molecule needs Java 1.4 Structure


[1-41]:
1qgia_PU2_1-41
CI=1.57


[42-144]:
1qgia_PU2_42-144
CI=3.99


[145-210]:
1qgia_PU2_145-210
CI=2.23


[211-230]:
1qgia_PU2_211-230
CI=2.12


[231-259 ]:
1qgia_PU2_231-259
CI=0.39


Level 3
PU
Molecule needs Java 1.4 Structure


[1-25]:
1qgia_PU3_1-25
CI=1.34


[26-41]:
1qgia_PU3_26-41
CI=0.80


[42-144]:
1qgia_PU3_42-144
CI=3.99


[145-210]:
1qgia_PU3_145-210
CI=2.23


[211-230]:
1qgia_PU3_211-230
CI=2.12


[231-259 ]:
1qgia_PU3_231-259
CI=0.39


Level 4
PU
Molecule needs Java 1.4 Structure


[1-25]:
1qgia_PU4_1-25
CI=1.34


[26-41]:
1qgia_PU4_26-41
CI=0.80


[42-144]:
1qgia_PU4_42-144
CI=3.99


[145-191]:
1qgia_PU4_145-191
CI=2.19


[192-210]:
1qgia_PU4_192-210
CI=1.16


[211-230]:
1qgia_PU4_211-230
CI=2.12


[231-259 ]:
1qgia_PU4_231-259
CI=0.39


Level 5
PU
Molecule needs Java 1.4 Structure


[1-25]:
1qgia_PU5_1-25
CI=1.34


[26-41]:
1qgia_PU5_26-41
CI=0.80


[42-144]:
1qgia_PU5_42-144
CI=3.99


[145-172]:
1qgia_PU5_145-172
CI=1.27


[173-191]:
1qgia_PU5_173-191
CI=2.06


[192-210]:
1qgia_PU5_192-210
CI=1.16


[211-230]:
1qgia_PU5_211-230
CI=2.12


[231-259 ]:
1qgia_PU5_231-259
CI=0.39


Level 6
PU
Molecule needs Java 1.4 Structure


[1-25]:
1qgia_PU6_1-25
CI=1.34


[26-41]:
1qgia_PU6_26-41
CI=0.80


[42-78]:
1qgia_PU6_42-78
CI=3.77


[79-118]:
1qgia_PU6_79-118
CI=2.55


[119-144]:
1qgia_PU6_119-144
CI=0.15


[145-172]:
1qgia_PU6_145-172
CI=1.27


[173-191]:
1qgia_PU6_173-191
CI=2.06


[192-210]:
1qgia_PU6_192-210
CI=1.16


[211-230]:
1qgia_PU6_211-230
CI=2.12


[231-259 ]:
1qgia_PU6_231-259
CI=0.39


Level 7
PU
Molecule needs Java 1.4 Structure


[1-25]:
1qgia_PU7_1-25
CI=1.34


[26-41]:
1qgia_PU7_26-41
CI=0.80


[42-78]:
1qgia_PU7_42-78
CI=3.77


[79-102]:
1qgia_PU7_79-102
CI=2.16


[103-118]:
1qgia_PU7_103-118
CI=1.61


[119-144]:
1qgia_PU7_119-144
CI=0.15


[145-172]:
1qgia_PU7_145-172
CI=1.27


[173-191]:
1qgia_PU7_173-191
CI=2.06


[192-210]:
1qgia_PU7_192-210
CI=1.16


[211-230]:
1qgia_PU7_211-230
CI=2.12


[231-259 ]:
1qgia_PU7_231-259
CI=0.39


Final level 8

PU
Molecule needs Java 1.4 Structure


[1-25]:
1qgia_PU_1-25
CI=1.34


[26-41]:
1qgia_PU_26-41
CI=0.80


[42-62]:
1qgia_PU_42-62
CI=1.89


[63-78]:
1qgia_PU_63-78
CI=1.62


[79-102]:
1qgia_PU_79-102
CI=2.16


[103-118]:
1qgia_PU_103-118
CI=1.61


[119-144]:
1qgia_PU_119-144
CI=0.15


[145-172]:
1qgia_PU_145-172
CI=1.27


[173-191]:
1qgia_PU_173-191
CI=2.06


[192-210]:
1qgia_PU_192-210
CI=1.16


[211-230]:
1qgia_PU_211-230
CI=2.12


[231-259 ]:
1qgia_PU_231-259
CI=0.39