Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-83]:
1qgva_PU0_1-83
CI=3.28


[84-130 ]:
1qgva_PU0_84-130
CI=1.91


Level 1
PU
Molecule needs Java 1.4 Structure


[1-31]:
1qgva_PU1_1-31
CI=0.30


[32-53]:
1qgva_PU1_32-53
CI=0.09


[54-83]:
1qgva_PU1_54-83
CI=0.37


[84-130 ]:
1qgva_PU1_84-130
CI=1.91


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-31]:
1qgva_PU_1-31
CI=0.30


[32-53]:
1qgva_PU_32-53
CI=0.09


[54-83]:
1qgva_PU_54-83
CI=0.37


[84-109]:
1qgva_PU_84-109
CI=0.07


[110-130 ]:
1qgva_PU_110-130
CI=0.78