Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-126]:
1qh5a_PU0_1-126
CI=4.73


[127-260 ]:
1qh5a_PU0_127-260
CI=3.33


Level 1
PU
Molecule needs Java 1.4 Structure


[1-126]:
1qh5a_PU1_1-126
CI=4.73


[127-226]:
1qh5a_PU1_127-226
CI=3.45


[227-260 ]:
1qh5a_PU1_227-260
CI=1.00


Level 2
PU
Molecule needs Java 1.4 Structure


[1-126]:
1qh5a_PU2_1-126
CI=4.73


[127-175]:
1qh5a_PU2_127-175
CI=2.58


[176-210]:
1qh5a_PU2_176-210
CI=1.18


[211-226]:
1qh5a_PU2_211-226
CI=0.47


[227-260 ]:
1qh5a_PU2_227-260
CI=1.00


Level 3
PU
Molecule needs Java 1.4 Structure


[1-88]:
1qh5a_PU3_1-88
CI=4.13


[89-126]:
1qh5a_PU3_89-126
CI=3.17


[127-175]:
1qh5a_PU3_127-175
CI=2.58


[176-210]:
1qh5a_PU3_176-210
CI=1.18


[211-226]:
1qh5a_PU3_211-226
CI=0.47


[227-260 ]:
1qh5a_PU3_227-260
CI=1.00


Level 4
PU
Molecule needs Java 1.4 Structure


[1-50]:
1qh5a_PU4_1-50
CI=3.19


[51-88]:
1qh5a_PU4_51-88
CI=2.75


[89-126]:
1qh5a_PU4_89-126
CI=3.17


[127-175]:
1qh5a_PU4_127-175
CI=2.58


[176-210]:
1qh5a_PU4_176-210
CI=1.18


[211-226]:
1qh5a_PU4_211-226
CI=0.47


[227-260 ]:
1qh5a_PU4_227-260
CI=1.00


Level 5
PU
Molecule needs Java 1.4 Structure


[1-50]:
1qh5a_PU5_1-50
CI=3.19


[51-88]:
1qh5a_PU5_51-88
CI=2.75


[89-126]:
1qh5a_PU5_89-126
CI=3.17


[127-175]:
1qh5a_PU5_127-175
CI=2.58


[176-210]:
1qh5a_PU5_176-210
CI=1.18


[211-226]:
1qh5a_PU5_211-226
CI=0.47


[227-244]:
1qh5a_PU5_227-244
CI=1.54


[245-260 ]:
1qh5a_PU5_245-260
CI=0.00


Level 6
PU
Molecule needs Java 1.4 Structure


[1-50]:
1qh5a_PU6_1-50
CI=3.19


[51-88]:
1qh5a_PU6_51-88
CI=2.75


[89-126]:
1qh5a_PU6_89-126
CI=3.17


[127-175]:
1qh5a_PU6_127-175
CI=2.58


[176-194]:
1qh5a_PU6_176-194
CI=0.68


[195-210]:
1qh5a_PU6_195-210
CI=0.45


[211-226]:
1qh5a_PU6_211-226
CI=0.47


[227-244]:
1qh5a_PU6_227-244
CI=1.54


[245-260 ]:
1qh5a_PU6_245-260
CI=0.00


Level 7
PU
Molecule needs Java 1.4 Structure


[1-22]:
1qh5a_PU7_1-22
CI=2.40


[23-50]:
1qh5a_PU7_23-50
CI=1.77


[51-88]:
1qh5a_PU7_51-88
CI=2.75


[89-126]:
1qh5a_PU7_89-126
CI=3.17


[127-175]:
1qh5a_PU7_127-175
CI=2.58


[176-194]:
1qh5a_PU7_176-194
CI=0.68


[195-210]:
1qh5a_PU7_195-210
CI=0.45


[211-226]:
1qh5a_PU7_211-226
CI=0.47


[227-244]:
1qh5a_PU7_227-244
CI=1.54


[245-260 ]:
1qh5a_PU7_245-260
CI=0.00


Level 8
PU
Molecule needs Java 1.4 Structure


[1-22]:
1qh5a_PU8_1-22
CI=2.40


[23-50]:
1qh5a_PU8_23-50
CI=1.77


[51-72]:
1qh5a_PU8_51-72
CI=0.34


[73-88]:
1qh5a_PU8_73-88
CI=2.20


[89-126]:
1qh5a_PU8_89-126
CI=3.17


[127-175]:
1qh5a_PU8_127-175
CI=2.58


[176-194]:
1qh5a_PU8_176-194
CI=0.68


[195-210]:
1qh5a_PU8_195-210
CI=0.45


[211-226]:
1qh5a_PU8_211-226
CI=0.47


[227-244]:
1qh5a_PU8_227-244
CI=1.54


[245-260 ]:
1qh5a_PU8_245-260
CI=0.00


Level 9
PU
Molecule needs Java 1.4 Structure


[1-22]:
1qh5a_PU9_1-22
CI=2.40


[23-50]:
1qh5a_PU9_23-50
CI=1.77


[51-72]:
1qh5a_PU9_51-72
CI=0.34


[73-88]:
1qh5a_PU9_73-88
CI=2.20


[89-105]:
1qh5a_PU9_89-105
CI=2.08


[106-126]:
1qh5a_PU9_106-126
CI=0.98


[127-175]:
1qh5a_PU9_127-175
CI=2.58


[176-194]:
1qh5a_PU9_176-194
CI=0.68


[195-210]:
1qh5a_PU9_195-210
CI=0.45


[211-226]:
1qh5a_PU9_211-226
CI=0.47


[227-244]:
1qh5a_PU9_227-244
CI=1.54


[245-260 ]:
1qh5a_PU9_245-260
CI=0.00


Final level 10

PU
Molecule needs Java 1.4 Structure


[1-22]:
1qh5a_PU_1-22
CI=2.40


[23-50]:
1qh5a_PU_23-50
CI=1.77


[51-72]:
1qh5a_PU_51-72
CI=0.34


[73-88]:
1qh5a_PU_73-88
CI=2.20


[89-105]:
1qh5a_PU_89-105
CI=2.08


[106-126]:
1qh5a_PU_106-126
CI=0.98


[127-147]:
1qh5a_PU_127-147
CI=0.54


[148-175]:
1qh5a_PU_148-175
CI=0.26


[176-194]:
1qh5a_PU_176-194
CI=0.68


[195-210]:
1qh5a_PU_195-210
CI=0.45


[211-226]:
1qh5a_PU_211-226
CI=0.47


[227-244]:
1qh5a_PU_227-244
CI=1.54


[245-260 ]:
1qh5a_PU_245-260
CI=0.00