Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-181]:
1qhia_PU0_1-181
CI=2.94


[182-247]:
1qhia_PU0_182-247
CI=1.33


[248-300 ]:
1qhia_PU0_248-300
CI=0.50


Level 1
PU
Molecule needs Java 1.4 Structure


[1-181]:
1qhia_PU1_1-181
CI=2.94


[182-247]:
1qhia_PU1_182-247
CI=1.33


[248-275]:
1qhia_PU1_248-275
CI=0.66


[276-300 ]:
1qhia_PU1_276-300
CI=0.07


Level 2
PU
Molecule needs Java 1.4 Structure


[1-31]:
1qhia_PU2_1-31
CI=0.24


[32-76]:
1qhia_PU2_32-76
CI=1.56


[77-181]:
1qhia_PU2_77-181
CI=1.47


[182-247]:
1qhia_PU2_182-247
CI=1.33


[248-275]:
1qhia_PU2_248-275
CI=0.66


[276-300 ]:
1qhia_PU2_276-300
CI=0.07


Level 3
PU
Molecule needs Java 1.4 Structure


[1-31]:
1qhia_PU3_1-31
CI=0.24


[32-76]:
1qhia_PU3_32-76
CI=1.56


[77-144]:
1qhia_PU3_77-144
CI=1.68


[145-181]:
1qhia_PU3_145-181
CI=0.15


[182-247]:
1qhia_PU3_182-247
CI=1.33


[248-275]:
1qhia_PU3_248-275
CI=0.66


[276-300 ]:
1qhia_PU3_276-300
CI=0.07


Level 4
PU
Molecule needs Java 1.4 Structure


[1-31]:
1qhia_PU4_1-31
CI=0.24


[32-76]:
1qhia_PU4_32-76
CI=1.56


[77-95]:
1qhia_PU4_77-95
CI=0.00


[96-136]:
1qhia_PU4_96-136
CI=1.04


[137-144]:
1qhia_PU4_137-144
CI=0.00


[145-181]:
1qhia_PU4_145-181
CI=0.15


[182-247]:
1qhia_PU4_182-247
CI=1.33


[248-275]:
1qhia_PU4_248-275
CI=0.66


[276-300 ]:
1qhia_PU4_276-300
CI=0.07


Level 5
PU
Molecule needs Java 1.4 Structure


[1-31]:
1qhia_PU5_1-31
CI=0.24


[32-76]:
1qhia_PU5_32-76
CI=1.56


[77-95]:
1qhia_PU5_77-95
CI=0.00


[96-136]:
1qhia_PU5_96-136
CI=1.04


[137-144]:
1qhia_PU5_137-144
CI=0.00


[145-181]:
1qhia_PU5_145-181
CI=0.15


[182-220]:
1qhia_PU5_182-220
CI=1.74


[221-247]:
1qhia_PU5_221-247
CI=0.43


[248-275]:
1qhia_PU5_248-275
CI=0.66


[276-300 ]:
1qhia_PU5_276-300
CI=0.07


Level 6
PU
Molecule needs Java 1.4 Structure


[1-31]:
1qhia_PU6_1-31
CI=0.24


[32-76]:
1qhia_PU6_32-76
CI=1.56


[77-95]:
1qhia_PU6_77-95
CI=0.00


[96-136]:
1qhia_PU6_96-136
CI=1.04


[137-144]:
1qhia_PU6_137-144
CI=0.00


[145-162]:
1qhia_PU6_145-162
CI=0.00


[163-181]:
1qhia_PU6_163-181
CI=0.00


[182-220]:
1qhia_PU6_182-220
CI=1.74


[221-247]:
1qhia_PU6_221-247
CI=0.43


[248-275]:
1qhia_PU6_248-275
CI=0.66


[276-300 ]:
1qhia_PU6_276-300
CI=0.07


Level 7
PU
Molecule needs Java 1.4 Structure


[1-31]:
1qhia_PU7_1-31
CI=0.24


[32-48]:
1qhia_PU7_32-48
CI=1.29


[49-76]:
1qhia_PU7_49-76
CI=1.21


[77-95]:
1qhia_PU7_77-95
CI=0.00


[96-136]:
1qhia_PU7_96-136
CI=1.04


[137-144]:
1qhia_PU7_137-144
CI=0.00


[145-162]:
1qhia_PU7_145-162
CI=0.00


[163-181]:
1qhia_PU7_163-181
CI=0.00


[182-220]:
1qhia_PU7_182-220
CI=1.74


[221-247]:
1qhia_PU7_221-247
CI=0.43


[248-275]:
1qhia_PU7_248-275
CI=0.66


[276-300 ]:
1qhia_PU7_276-300
CI=0.07


Final level 8

PU
Molecule needs Java 1.4 Structure


[1-31]:
1qhia_PU_1-31
CI=0.24


[32-48]:
1qhia_PU_32-48
CI=1.29


[49-76]:
1qhia_PU_49-76
CI=1.21


[77-95]:
1qhia_PU_77-95
CI=0.00


[96-112]:
1qhia_PU_96-112
CI=0.00


[113-136]:
1qhia_PU_113-136
CI=1.33


[137-144]:
1qhia_PU_137-144
CI=0.00


[145-162]:
1qhia_PU_145-162
CI=0.00


[163-181]:
1qhia_PU_163-181
CI=0.00


[182-220]:
1qhia_PU_182-220
CI=1.74


[221-247]:
1qhia_PU_221-247
CI=0.43


[248-275]:
1qhia_PU_248-275
CI=0.66


[276-300 ]:
1qhia_PU_276-300
CI=0.07