Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-64]:
1qhqa_PU0_1-64
CI=2.43


[65-90]:
1qhqa_PU0_65-90
CI=1.44


[91-139 ]:
1qhqa_PU0_91-139
CI=2.14


Level 1
PU
Molecule needs Java 1.4 Structure


[1-64]:
1qhqa_PU1_1-64
CI=2.43


[65-90]:
1qhqa_PU1_65-90
CI=1.44


[91-111]:
1qhqa_PU1_91-111
CI=1.31


[112-139 ]:
1qhqa_PU1_112-139
CI=2.50


Level 2
PU
Molecule needs Java 1.4 Structure


[1-47]:
1qhqa_PU2_1-47
CI=2.24


[48-64]:
1qhqa_PU2_48-64
CI=0.22


[65-90]:
1qhqa_PU2_65-90
CI=1.44


[91-111]:
1qhqa_PU2_91-111
CI=1.31


[112-139 ]:
1qhqa_PU2_112-139
CI=2.50


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-21]:
1qhqa_PU_1-21
CI=0.00


[22-47]:
1qhqa_PU_22-47
CI=0.58


[48-64]:
1qhqa_PU_48-64
CI=0.22


[65-90]:
1qhqa_PU_65-90
CI=1.44


[91-111]:
1qhqa_PU_91-111
CI=1.31


[112-139 ]:
1qhqa_PU_112-139
CI=2.50