Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-88]:
1qj8a_PU0_1-88
CI=5.15


[89-104]:
1qj8a_PU0_89-104
CI=1.86


[105-148 ]:
1qj8a_PU0_105-148
CI=3.82


Level 1
PU
Molecule needs Java 1.4 Structure


[1-46]:
1qj8a_PU1_1-46
CI=4.27


[47-62]:
1qj8a_PU1_47-62
CI=2.09


[63-88]:
1qj8a_PU1_63-88
CI=2.85


[89-104]:
1qj8a_PU1_89-104
CI=1.86


[105-148 ]:
1qj8a_PU1_105-148
CI=3.82


Level 2
PU
Molecule needs Java 1.4 Structure


[1-26]:
1qj8a_PU2_1-26
CI=2.33


[27-46]:
1qj8a_PU2_27-46
CI=1.70


[47-62]:
1qj8a_PU2_47-62
CI=2.09


[63-88]:
1qj8a_PU2_63-88
CI=2.85


[89-104]:
1qj8a_PU2_89-104
CI=1.86


[105-148 ]:
1qj8a_PU2_105-148
CI=3.82


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-26]:
1qj8a_PU_1-26
CI=2.33


[27-46]:
1qj8a_PU_27-46
CI=1.70


[47-62]:
1qj8a_PU_47-62
CI=2.09


[63-88]:
1qj8a_PU_63-88
CI=2.85


[89-104]:
1qj8a_PU_89-104
CI=1.86


[105-126]:
1qj8a_PU_105-126
CI=1.72


[127-148 ]:
1qj8a_PU_127-148
CI=1.46