Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-82]:
1qjpa_PU0_1-82
CI=5.15


[83-98]:
1qjpa_PU0_83-98
CI=2.20


[99-137 ]:
1qjpa_PU0_99-137
CI=3.50


Level 1
PU
Molecule needs Java 1.4 Structure


[1-57]:
1qjpa_PU1_1-57
CI=4.91


[58-82]:
1qjpa_PU1_58-82
CI=2.45


[83-98]:
1qjpa_PU1_83-98
CI=2.20


[99-137 ]:
1qjpa_PU1_99-137
CI=3.50


Level 2
PU
Molecule needs Java 1.4 Structure


[1-41]:
1qjpa_PU2_1-41
CI=3.75


[42-57]:
1qjpa_PU2_42-57
CI=2.31


[58-82]:
1qjpa_PU2_58-82
CI=2.45


[83-98]:
1qjpa_PU2_83-98
CI=2.20


[99-137 ]:
1qjpa_PU2_99-137
CI=3.50


Level 3
PU
Molecule needs Java 1.4 Structure


[1-25]:
1qjpa_PU3_1-25
CI=1.59


[26-41]:
1qjpa_PU3_26-41
CI=2.19


[42-57]:
1qjpa_PU3_42-57
CI=2.31


[58-82]:
1qjpa_PU3_58-82
CI=2.45


[83-98]:
1qjpa_PU3_83-98
CI=2.20


[99-137 ]:
1qjpa_PU3_99-137
CI=3.50


Final level 4

PU
Molecule needs Java 1.4 Structure


[1-25]:
1qjpa_PU_1-25
CI=1.59


[26-41]:
1qjpa_PU_26-41
CI=2.19


[42-57]:
1qjpa_PU_42-57
CI=2.31


[58-82]:
1qjpa_PU_58-82
CI=2.45


[83-98]:
1qjpa_PU_83-98
CI=2.20


[99-118]:
1qjpa_PU_99-118
CI=1.04


[119-137 ]:
1qjpa_PU_119-137
CI=1.28