Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-48]:
1qkra_PU0_1-48
CI=1.30


[49-160]:
1qkra_PU0_49-160
CI=2.56


[161-172 ]:
1qkra_PU0_161-172
CI=0.00


Level 1
PU
Molecule needs Java 1.4 Structure


[1-48]:
1qkra_PU1_1-48
CI=1.30


[49-119]:
1qkra_PU1_49-119
CI=1.81


[120-137]:
1qkra_PU1_120-137
CI=0.00


[138-160]:
1qkra_PU1_138-160
CI=0.00


[161-172 ]:
1qkra_PU1_161-172
CI=0.00


Level 2
PU
Molecule needs Java 1.4 Structure


[1-48]:
1qkra_PU2_1-48
CI=1.30


[49-73]:
1qkra_PU2_49-73
CI=0.37


[74-100]:
1qkra_PU2_74-100
CI=1.04


[101-119]:
1qkra_PU2_101-119
CI=0.09


[120-137]:
1qkra_PU2_120-137
CI=0.00


[138-160]:
1qkra_PU2_138-160
CI=0.00


[161-172 ]:
1qkra_PU2_161-172
CI=0.00


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-17]:
1qkra_PU_1-17
CI=0.00


[18-48]:
1qkra_PU_18-48
CI=1.39


[49-73]:
1qkra_PU_49-73
CI=0.37


[74-100]:
1qkra_PU_74-100
CI=1.04


[101-119]:
1qkra_PU_101-119
CI=0.09


[120-137]:
1qkra_PU_120-137
CI=0.00


[138-160]:
1qkra_PU_138-160
CI=0.00


[161-172 ]:
1qkra_PU_161-172
CI=0.00