Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-180]:
1qlma_PU0_1-180
CI=5.04


[181-316 ]:
1qlma_PU0_181-316
CI=4.57


Level 1
PU
Molecule needs Java 1.4 Structure


[1-63]:
1qlma_PU1_1-63
CI=2.44


[64-79]:
1qlma_PU1_64-79
CI=2.33


[80-180]:
1qlma_PU1_80-180
CI=3.38


[181-316 ]:
1qlma_PU1_181-316
CI=4.57


Level 2
PU
Molecule needs Java 1.4 Structure


[1-17]:
1qlma_PU2_1-17
CI=0.00


[18-49]:
1qlma_PU2_18-49
CI=2.38


[50-63]:
1qlma_PU2_50-63
CI=1.18


[64-79]:
1qlma_PU2_64-79
CI=2.33


[80-180]:
1qlma_PU2_80-180
CI=3.38


[181-316 ]:
1qlma_PU2_181-316
CI=4.57


Level 3
PU
Molecule needs Java 1.4 Structure


[1-17]:
1qlma_PU3_1-17
CI=0.00


[18-49]:
1qlma_PU3_18-49
CI=2.38


[50-63]:
1qlma_PU3_50-63
CI=1.18


[64-79]:
1qlma_PU3_64-79
CI=2.33


[80-131]:
1qlma_PU3_80-131
CI=2.48


[132-180]:
1qlma_PU3_132-180
CI=2.43


[181-316 ]:
1qlma_PU3_181-316
CI=4.57


Level 4
PU
Molecule needs Java 1.4 Structure


[1-17]:
1qlma_PU4_1-17
CI=0.00


[18-49]:
1qlma_PU4_18-49
CI=2.38


[50-63]:
1qlma_PU4_50-63
CI=1.18


[64-79]:
1qlma_PU4_64-79
CI=2.33


[80-131]:
1qlma_PU4_80-131
CI=2.48


[132-180]:
1qlma_PU4_132-180
CI=2.43


[181-263]:
1qlma_PU4_181-263
CI=2.48


[264-279]:
1qlma_PU4_264-279
CI=0.69


[280-316 ]:
1qlma_PU4_280-316
CI=1.35


Level 5
PU
Molecule needs Java 1.4 Structure


[1-17]:
1qlma_PU5_1-17
CI=0.00


[18-49]:
1qlma_PU5_18-49
CI=2.38


[50-63]:
1qlma_PU5_50-63
CI=1.18


[64-79]:
1qlma_PU5_64-79
CI=2.33


[80-131]:
1qlma_PU5_80-131
CI=2.48


[132-180]:
1qlma_PU5_132-180
CI=2.43


[181-211]:
1qlma_PU5_181-211
CI=1.33


[212-227]:
1qlma_PU5_212-227
CI=0.91


[228-263]:
1qlma_PU5_228-263
CI=0.57


[264-279]:
1qlma_PU5_264-279
CI=0.69


[280-316 ]:
1qlma_PU5_280-316
CI=1.35


Level 6
PU
Molecule needs Java 1.4 Structure


[1-17]:
1qlma_PU6_1-17
CI=0.00


[18-49]:
1qlma_PU6_18-49
CI=2.38


[50-63]:
1qlma_PU6_50-63
CI=1.18


[64-79]:
1qlma_PU6_64-79
CI=2.33


[80-131]:
1qlma_PU6_80-131
CI=2.48


[132-180]:
1qlma_PU6_132-180
CI=2.43


[181-211]:
1qlma_PU6_181-211
CI=1.33


[212-227]:
1qlma_PU6_212-227
CI=0.91


[228-244]:
1qlma_PU6_228-244
CI=0.00


[245-263]:
1qlma_PU6_245-263
CI=0.39


[264-279]:
1qlma_PU6_264-279
CI=0.69


[280-316 ]:
1qlma_PU6_280-316
CI=1.35


Level 7
PU
Molecule needs Java 1.4 Structure


[1-17]:
1qlma_PU7_1-17
CI=0.00


[18-49]:
1qlma_PU7_18-49
CI=2.38


[50-63]:
1qlma_PU7_50-63
CI=1.18


[64-79]:
1qlma_PU7_64-79
CI=2.33


[80-111]:
1qlma_PU7_80-111
CI=2.08


[112-131]:
1qlma_PU7_112-131
CI=1.11


[132-180]:
1qlma_PU7_132-180
CI=2.43


[181-211]:
1qlma_PU7_181-211
CI=1.33


[212-227]:
1qlma_PU7_212-227
CI=0.91


[228-244]:
1qlma_PU7_228-244
CI=0.00


[245-263]:
1qlma_PU7_245-263
CI=0.39


[264-279]:
1qlma_PU7_264-279
CI=0.69


[280-316 ]:
1qlma_PU7_280-316
CI=1.35


Level 8
PU
Molecule needs Java 1.4 Structure


[1-17]:
1qlma_PU8_1-17
CI=0.00


[18-49]:
1qlma_PU8_18-49
CI=2.38


[50-63]:
1qlma_PU8_50-63
CI=1.18


[64-79]:
1qlma_PU8_64-79
CI=2.33


[80-111]:
1qlma_PU8_80-111
CI=2.08


[112-131]:
1qlma_PU8_112-131
CI=1.11


[132-180]:
1qlma_PU8_132-180
CI=2.43


[181-211]:
1qlma_PU8_181-211
CI=1.33


[212-227]:
1qlma_PU8_212-227
CI=0.91


[228-244]:
1qlma_PU8_228-244
CI=0.00


[245-263]:
1qlma_PU8_245-263
CI=0.39


[264-279]:
1qlma_PU8_264-279
CI=0.69


[280-297]:
1qlma_PU8_280-297
CI=0.00


[298-316 ]:
1qlma_PU8_298-316
CI=0.00


Final level 9

PU
Molecule needs Java 1.4 Structure


[1-17]:
1qlma_PU_1-17
CI=0.00


[18-49]:
1qlma_PU_18-49
CI=2.38


[50-63]:
1qlma_PU_50-63
CI=1.18


[64-79]:
1qlma_PU_64-79
CI=2.33


[80-111]:
1qlma_PU_80-111
CI=2.08


[112-131]:
1qlma_PU_112-131
CI=1.11


[132-159]:
1qlma_PU_132-159
CI=0.46


[160-180]:
1qlma_PU_160-180
CI=0.36


[181-211]:
1qlma_PU_181-211
CI=1.33


[212-227]:
1qlma_PU_212-227
CI=0.91


[228-244]:
1qlma_PU_228-244
CI=0.00


[245-263]:
1qlma_PU_245-263
CI=0.39


[264-279]:
1qlma_PU_264-279
CI=0.69


[280-297]:
1qlma_PU_280-297
CI=0.00


[298-316 ]:
1qlma_PU_298-316
CI=0.00