Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-90]:
1qlpa_PU0_1-90
CI=1.32


[91-167]:
1qlpa_PU0_91-167
CI=2.88


[168-372 ]:
1qlpa_PU0_168-372
CI=3.70


Level 1
PU
Molecule needs Java 1.4 Structure


[1-90]:
1qlpa_PU1_1-90
CI=1.32


[91-167]:
1qlpa_PU1_91-167
CI=2.88


[168-276]:
1qlpa_PU1_168-276
CI=2.96


[277-310]:
1qlpa_PU1_277-310
CI=1.23


[311-372 ]:
1qlpa_PU1_311-372
CI=0.97


Level 2
PU
Molecule needs Java 1.4 Structure


[1-90]:
1qlpa_PU2_1-90
CI=1.32


[91-167]:
1qlpa_PU2_91-167
CI=2.88


[168-276]:
1qlpa_PU2_168-276
CI=2.96


[277-310]:
1qlpa_PU2_277-310
CI=1.23


[311-327]:
1qlpa_PU2_311-327
CI=0.00


[328-343]:
1qlpa_PU2_328-343
CI=0.00


[344-372 ]:
1qlpa_PU2_344-372
CI=1.97


Level 3
PU
Molecule needs Java 1.4 Structure


[1-90]:
1qlpa_PU3_1-90
CI=1.32


[91-167]:
1qlpa_PU3_91-167
CI=2.88


[168-205]:
1qlpa_PU3_168-205
CI=1.82


[206-258]:
1qlpa_PU3_206-258
CI=2.57


[259-276]:
1qlpa_PU3_259-276
CI=0.00


[277-310]:
1qlpa_PU3_277-310
CI=1.23


[311-327]:
1qlpa_PU3_311-327
CI=0.00


[328-343]:
1qlpa_PU3_328-343
CI=0.00


[344-372 ]:
1qlpa_PU3_344-372
CI=1.97


Level 4
PU
Molecule needs Java 1.4 Structure


[1-74]:
1qlpa_PU4_1-74
CI=1.42


[75-90]:
1qlpa_PU4_75-90
CI=0.55


[91-167]:
1qlpa_PU4_91-167
CI=2.88


[168-205]:
1qlpa_PU4_168-205
CI=1.82


[206-258]:
1qlpa_PU4_206-258
CI=2.57


[259-276]:
1qlpa_PU4_259-276
CI=0.00


[277-310]:
1qlpa_PU4_277-310
CI=1.23


[311-327]:
1qlpa_PU4_311-327
CI=0.00


[328-343]:
1qlpa_PU4_328-343
CI=0.00


[344-372 ]:
1qlpa_PU4_344-372
CI=1.97


Level 5
PU
Molecule needs Java 1.4 Structure


[1-35]:
1qlpa_PU5_1-35
CI=0.85


[36-74]:
1qlpa_PU5_36-74
CI=0.92


[75-90]:
1qlpa_PU5_75-90
CI=0.55


[91-167]:
1qlpa_PU5_91-167
CI=2.88


[168-205]:
1qlpa_PU5_168-205
CI=1.82


[206-258]:
1qlpa_PU5_206-258
CI=2.57


[259-276]:
1qlpa_PU5_259-276
CI=0.00


[277-310]:
1qlpa_PU5_277-310
CI=1.23


[311-327]:
1qlpa_PU5_311-327
CI=0.00


[328-343]:
1qlpa_PU5_328-343
CI=0.00


[344-372 ]:
1qlpa_PU5_344-372
CI=1.97


Level 6
PU
Molecule needs Java 1.4 Structure


[1-35]:
1qlpa_PU6_1-35
CI=0.85


[36-74]:
1qlpa_PU6_36-74
CI=0.92


[75-90]:
1qlpa_PU6_75-90
CI=0.55


[91-123]:
1qlpa_PU6_91-123
CI=1.85


[124-158]:
1qlpa_PU6_124-158
CI=1.45


[159-167]:
1qlpa_PU6_159-167
CI=0.00


[168-205]:
1qlpa_PU6_168-205
CI=1.82


[206-258]:
1qlpa_PU6_206-258
CI=2.57


[259-276]:
1qlpa_PU6_259-276
CI=0.00


[277-310]:
1qlpa_PU6_277-310
CI=1.23


[311-327]:
1qlpa_PU6_311-327
CI=0.00


[328-343]:
1qlpa_PU6_328-343
CI=0.00


[344-372 ]:
1qlpa_PU6_344-372
CI=1.97


Level 7
PU
Molecule needs Java 1.4 Structure


[1-35]:
1qlpa_PU7_1-35
CI=0.85


[36-58]:
1qlpa_PU7_36-58
CI=0.96


[59-74]:
1qlpa_PU7_59-74
CI=0.00


[75-90]:
1qlpa_PU7_75-90
CI=0.55


[91-123]:
1qlpa_PU7_91-123
CI=1.85


[124-158]:
1qlpa_PU7_124-158
CI=1.45


[159-167]:
1qlpa_PU7_159-167
CI=0.00


[168-205]:
1qlpa_PU7_168-205
CI=1.82


[206-258]:
1qlpa_PU7_206-258
CI=2.57


[259-276]:
1qlpa_PU7_259-276
CI=0.00


[277-310]:
1qlpa_PU7_277-310
CI=1.23


[311-327]:
1qlpa_PU7_311-327
CI=0.00


[328-343]:
1qlpa_PU7_328-343
CI=0.00


[344-372 ]:
1qlpa_PU7_344-372
CI=1.97


Final level 8

PU
Molecule needs Java 1.4 Structure


[1-35]:
1qlpa_PU_1-35
CI=0.85


[36-58]:
1qlpa_PU_36-58
CI=0.96


[59-74]:
1qlpa_PU_59-74
CI=0.00


[75-90]:
1qlpa_PU_75-90
CI=0.55


[91-123]:
1qlpa_PU_91-123
CI=1.85


[124-158]:
1qlpa_PU_124-158
CI=1.45


[159-167]:
1qlpa_PU_159-167
CI=0.00


[168-205]:
1qlpa_PU_168-205
CI=1.82


[206-258]:
1qlpa_PU_206-258
CI=2.57


[259-276]:
1qlpa_PU_259-276
CI=0.00


[277-293]:
1qlpa_PU_277-293
CI=0.11


[294-310]:
1qlpa_PU_294-310
CI=0.55


[311-327]:
1qlpa_PU_311-327
CI=0.00


[328-343]:
1qlpa_PU_328-343
CI=0.00


[344-372 ]:
1qlpa_PU_344-372
CI=1.97