Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-109]:
1qlwa_PU0_1-109
CI=4.28


[110-127]:
1qlwa_PU0_110-127
CI=1.33


[128-318 ]:
1qlwa_PU0_128-318
CI=3.53


Level 1
PU
Molecule needs Java 1.4 Structure


[1-20]:
1qlwa_PU1_1-20
CI=0.00


[21-42]:
1qlwa_PU1_21-42
CI=2.57


[43-109]:
1qlwa_PU1_43-109
CI=4.44


[110-127]:
1qlwa_PU1_110-127
CI=1.33


[128-318 ]:
1qlwa_PU1_128-318
CI=3.53


Level 2
PU
Molecule needs Java 1.4 Structure


[1-20]:
1qlwa_PU2_1-20
CI=0.00


[21-42]:
1qlwa_PU2_21-42
CI=2.57


[43-109]:
1qlwa_PU2_43-109
CI=4.44


[110-127]:
1qlwa_PU2_110-127
CI=1.33


[128-177]:
1qlwa_PU2_128-177
CI=1.80


[178-290]:
1qlwa_PU2_178-290
CI=4.04


[291-318 ]:
1qlwa_PU2_291-318
CI=0.39


Level 3
PU
Molecule needs Java 1.4 Structure


[1-20]:
1qlwa_PU3_1-20
CI=0.00


[21-42]:
1qlwa_PU3_21-42
CI=2.57


[43-109]:
1qlwa_PU3_43-109
CI=4.44


[110-127]:
1qlwa_PU3_110-127
CI=1.33


[128-177]:
1qlwa_PU3_128-177
CI=1.80


[178-224]:
1qlwa_PU3_178-224
CI=3.12


[225-290]:
1qlwa_PU3_225-290
CI=3.14


[291-318 ]:
1qlwa_PU3_291-318
CI=0.39


Level 4
PU
Molecule needs Java 1.4 Structure


[1-20]:
1qlwa_PU4_1-20
CI=0.00


[21-42]:
1qlwa_PU4_21-42
CI=2.57


[43-109]:
1qlwa_PU4_43-109
CI=4.44


[110-127]:
1qlwa_PU4_110-127
CI=1.33


[128-158]:
1qlwa_PU4_128-158
CI=1.57


[159-177]:
1qlwa_PU4_159-177
CI=0.00


[178-224]:
1qlwa_PU4_178-224
CI=3.12


[225-290]:
1qlwa_PU4_225-290
CI=3.14


[291-318 ]:
1qlwa_PU4_291-318
CI=0.39


Level 5
PU
Molecule needs Java 1.4 Structure


[1-20]:
1qlwa_PU5_1-20
CI=0.00


[21-42]:
1qlwa_PU5_21-42
CI=2.57


[43-109]:
1qlwa_PU5_43-109
CI=4.44


[110-127]:
1qlwa_PU5_110-127
CI=1.33


[128-158]:
1qlwa_PU5_128-158
CI=1.57


[159-177]:
1qlwa_PU5_159-177
CI=0.00


[178-224]:
1qlwa_PU5_178-224
CI=3.12


[225-248]:
1qlwa_PU5_225-248
CI=0.86


[249-264]:
1qlwa_PU5_249-264
CI=0.47


[265-290]:
1qlwa_PU5_265-290
CI=0.80


[291-318 ]:
1qlwa_PU5_291-318
CI=0.39


Level 6
PU
Molecule needs Java 1.4 Structure


[1-20]:
1qlwa_PU6_1-20
CI=0.00


[21-42]:
1qlwa_PU6_21-42
CI=2.57


[43-64]:
1qlwa_PU6_43-64
CI=0.25


[65-91]:
1qlwa_PU6_65-91
CI=1.18


[92-109]:
1qlwa_PU6_92-109
CI=0.72


[110-127]:
1qlwa_PU6_110-127
CI=1.33


[128-158]:
1qlwa_PU6_128-158
CI=1.57


[159-177]:
1qlwa_PU6_159-177
CI=0.00


[178-224]:
1qlwa_PU6_178-224
CI=3.12


[225-248]:
1qlwa_PU6_225-248
CI=0.86


[249-264]:
1qlwa_PU6_249-264
CI=0.47


[265-290]:
1qlwa_PU6_265-290
CI=0.80


[291-318 ]:
1qlwa_PU6_291-318
CI=0.39


Final level 7

PU
Molecule needs Java 1.4 Structure


[1-20]:
1qlwa_PU_1-20
CI=0.00


[21-42]:
1qlwa_PU_21-42
CI=2.57


[43-64]:
1qlwa_PU_43-64
CI=0.25


[65-91]:
1qlwa_PU_65-91
CI=1.18


[92-109]:
1qlwa_PU_92-109
CI=0.72


[110-127]:
1qlwa_PU_110-127
CI=1.33


[128-158]:
1qlwa_PU_128-158
CI=1.57


[159-177]:
1qlwa_PU_159-177
CI=0.00


[178-194]:
1qlwa_PU_178-194
CI=0.00


[195-224]:
1qlwa_PU_195-224
CI=2.34


[225-248]:
1qlwa_PU_225-248
CI=0.86


[249-264]:
1qlwa_PU_249-264
CI=0.47


[265-290]:
1qlwa_PU_265-290
CI=0.80


[291-318 ]:
1qlwa_PU_291-318
CI=0.39