Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-39]:
1qmya_PU0_1-39
CI=1.40


[40-67]:
1qmya_PU0_40-67
CI=0.99


[68-156 ]:
1qmya_PU0_68-156
CI=3.78


Level 1
PU
Molecule needs Java 1.4 Structure


[1-39]:
1qmya_PU1_1-39
CI=1.40


[40-67]:
1qmya_PU1_40-67
CI=0.99


[68-102]:
1qmya_PU1_68-102
CI=1.70


[103-156 ]:
1qmya_PU1_103-156
CI=3.92


Level 2
PU
Molecule needs Java 1.4 Structure


[1-17]:
1qmya_PU2_1-17
CI=1.86


[18-39]:
1qmya_PU2_18-39
CI=0.32


[40-67]:
1qmya_PU2_40-67
CI=0.99


[68-102]:
1qmya_PU2_68-102
CI=1.70


[103-156 ]:
1qmya_PU2_103-156
CI=3.92


Level 3
PU
Molecule needs Java 1.4 Structure


[1-17]:
1qmya_PU3_1-17
CI=1.86


[18-39]:
1qmya_PU3_18-39
CI=0.32


[40-67]:
1qmya_PU3_40-67
CI=0.99


[68-84]:
1qmya_PU3_68-84
CI=0.00


[85-102]:
1qmya_PU3_85-102
CI=2.81


[103-156 ]:
1qmya_PU3_103-156
CI=3.92


Final level 4

PU
Molecule needs Java 1.4 Structure


[1-17]:
1qmya_PU_1-17
CI=1.86


[18-39]:
1qmya_PU_18-39
CI=0.32


[40-67]:
1qmya_PU_40-67
CI=0.99


[68-84]:
1qmya_PU_68-84
CI=0.00


[85-102]:
1qmya_PU_85-102
CI=2.81


[103-124]:
1qmya_PU_103-124
CI=1.37


[125-156 ]:
1qmya_PU_125-156
CI=1.48