Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-16]:
1qnaa_PU0_1-16
CI=0.00


[17-97]:
1qnaa_PU0_17-97
CI=3.53


[98-182 ]:
1qnaa_PU0_98-182
CI=4.09


Level 1
PU
Molecule needs Java 1.4 Structure


[1-16]:
1qnaa_PU1_1-16
CI=0.00


[17-32]:
1qnaa_PU1_17-32
CI=0.00


[33-81]:
1qnaa_PU1_33-81
CI=3.24


[82-97]:
1qnaa_PU1_82-97
CI=0.80


[98-182 ]:
1qnaa_PU1_98-182
CI=4.09


Level 2
PU
Molecule needs Java 1.4 Structure


[1-16]:
1qnaa_PU2_1-16
CI=0.00


[17-32]:
1qnaa_PU2_17-32
CI=0.00


[33-81]:
1qnaa_PU2_33-81
CI=3.24


[82-97]:
1qnaa_PU2_82-97
CI=0.80


[98-120]:
1qnaa_PU2_98-120
CI=0.00


[121-138]:
1qnaa_PU2_121-138
CI=1.46


[139-182 ]:
1qnaa_PU2_139-182
CI=1.90


Level 3
PU
Molecule needs Java 1.4 Structure


[1-16]:
1qnaa_PU3_1-16
CI=0.00


[17-32]:
1qnaa_PU3_17-32
CI=0.00


[33-81]:
1qnaa_PU3_33-81
CI=3.24


[82-97]:
1qnaa_PU3_82-97
CI=0.80


[98-120]:
1qnaa_PU3_98-120
CI=0.00


[121-138]:
1qnaa_PU3_121-138
CI=1.46


[139-166]:
1qnaa_PU3_139-166
CI=2.16


[167-182 ]:
1qnaa_PU3_167-182
CI=0.00


Final level 4

PU
Molecule needs Java 1.4 Structure


[1-16]:
1qnaa_PU_1-16
CI=0.00


[17-32]:
1qnaa_PU_17-32
CI=0.00


[33-49]:
1qnaa_PU_33-49
CI=1.75


[50-81]:
1qnaa_PU_50-81
CI=2.59


[82-97]:
1qnaa_PU_82-97
CI=0.80


[98-120]:
1qnaa_PU_98-120
CI=0.00


[121-138]:
1qnaa_PU_121-138
CI=1.46


[139-166]:
1qnaa_PU_139-166
CI=2.16


[167-182 ]:
1qnaa_PU_167-182
CI=0.00