Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-77]:
1qopb_PU0_1-77
CI=2.47


[78-151]:
1qopb_PU0_78-151
CI=2.52


[152-265 ]:
1qopb_PU0_152-265
CI=3.69


Level 1
PU
Molecule needs Java 1.4 Structure


[1-77]:
1qopb_PU1_1-77
CI=2.47


[78-151]:
1qopb_PU1_78-151
CI=2.52


[152-232]:
1qopb_PU1_152-232
CI=4.07


[233-265 ]:
1qopb_PU1_233-265
CI=0.63


Level 2
PU
Molecule needs Java 1.4 Structure


[1-51]:
1qopb_PU2_1-51
CI=1.69


[52-77]:
1qopb_PU2_52-77
CI=1.44


[78-151]:
1qopb_PU2_78-151
CI=2.52


[152-232]:
1qopb_PU2_152-232
CI=4.07


[233-265 ]:
1qopb_PU2_233-265
CI=0.63


Level 3
PU
Molecule needs Java 1.4 Structure


[1-51]:
1qopb_PU3_1-51
CI=1.69


[52-77]:
1qopb_PU3_52-77
CI=1.44


[78-95]:
1qopb_PU3_78-95
CI=0.10


[96-151]:
1qopb_PU3_96-151
CI=2.75


[152-232]:
1qopb_PU3_152-232
CI=4.07


[233-265 ]:
1qopb_PU3_233-265
CI=0.63


Level 4
PU
Molecule needs Java 1.4 Structure


[1-23]:
1qopb_PU4_1-23
CI=0.47


[24-51]:
1qopb_PU4_24-51
CI=0.55


[52-77]:
1qopb_PU4_52-77
CI=1.44


[78-95]:
1qopb_PU4_78-95
CI=0.10


[96-151]:
1qopb_PU4_96-151
CI=2.75


[152-232]:
1qopb_PU4_152-232
CI=4.07


[233-265 ]:
1qopb_PU4_233-265
CI=0.63


Level 5
PU
Molecule needs Java 1.4 Structure


[1-23]:
1qopb_PU5_1-23
CI=0.47


[24-51]:
1qopb_PU5_24-51
CI=0.55


[52-77]:
1qopb_PU5_52-77
CI=1.44


[78-95]:
1qopb_PU5_78-95
CI=0.10


[96-151]:
1qopb_PU5_96-151
CI=2.75


[152-232]:
1qopb_PU5_152-232
CI=4.07


[233-249]:
1qopb_PU5_233-249
CI=0.44


[250-265 ]:
1qopb_PU5_250-265
CI=0.00


Level 6
PU
Molecule needs Java 1.4 Structure


[1-23]:
1qopb_PU6_1-23
CI=0.47


[24-51]:
1qopb_PU6_24-51
CI=0.55


[52-77]:
1qopb_PU6_52-77
CI=1.44


[78-95]:
1qopb_PU6_78-95
CI=0.10


[96-151]:
1qopb_PU6_96-151
CI=2.75


[152-205]:
1qopb_PU6_152-205
CI=2.72


[206-232]:
1qopb_PU6_206-232
CI=2.59


[233-249]:
1qopb_PU6_233-249
CI=0.44


[250-265 ]:
1qopb_PU6_250-265
CI=0.00


Level 7
PU
Molecule needs Java 1.4 Structure


[1-23]:
1qopb_PU7_1-23
CI=0.47


[24-51]:
1qopb_PU7_24-51
CI=0.55


[52-77]:
1qopb_PU7_52-77
CI=1.44


[78-95]:
1qopb_PU7_78-95
CI=0.10


[96-130]:
1qopb_PU7_96-130
CI=2.02


[131-151]:
1qopb_PU7_131-151
CI=0.53


[152-205]:
1qopb_PU7_152-205
CI=2.72


[206-232]:
1qopb_PU7_206-232
CI=2.59


[233-249]:
1qopb_PU7_233-249
CI=0.44


[250-265 ]:
1qopb_PU7_250-265
CI=0.00


Level 8
PU
Molecule needs Java 1.4 Structure


[1-23]:
1qopb_PU8_1-23
CI=0.47


[24-51]:
1qopb_PU8_24-51
CI=0.55


[52-77]:
1qopb_PU8_52-77
CI=1.44


[78-95]:
1qopb_PU8_78-95
CI=0.10


[96-130]:
1qopb_PU8_96-130
CI=2.02


[131-151]:
1qopb_PU8_131-151
CI=0.53


[152-177]:
1qopb_PU8_152-177
CI=1.95


[178-205]:
1qopb_PU8_178-205
CI=0.46


[206-232]:
1qopb_PU8_206-232
CI=2.59


[233-249]:
1qopb_PU8_233-249
CI=0.44


[250-265 ]:
1qopb_PU8_250-265
CI=0.00


Final level 9

PU
Molecule needs Java 1.4 Structure


[1-23]:
1qopb_PU_1-23
CI=0.47


[24-51]:
1qopb_PU_24-51
CI=0.55


[52-77]:
1qopb_PU_52-77
CI=1.44


[78-95]:
1qopb_PU_78-95
CI=0.10


[96-114]:
1qopb_PU_96-114
CI=0.19


[115-130]:
1qopb_PU_115-130
CI=0.11


[131-151]:
1qopb_PU_131-151
CI=0.53


[152-177]:
1qopb_PU_152-177
CI=1.95


[178-205]:
1qopb_PU_178-205
CI=0.46


[206-232]:
1qopb_PU_206-232
CI=2.59


[233-249]:
1qopb_PU_233-249
CI=0.44


[250-265 ]:
1qopb_PU_250-265
CI=0.00