Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-48]:
1qoua_PU0_1-48
CI=1.99


[49-140]:
1qoua_PU0_49-140
CI=4.63


[141-154 ]:
1qoua_PU0_141-154
CI=0.00


Level 1
PU
Molecule needs Java 1.4 Structure


[1-20]:
1qoua_PU1_1-20
CI=0.64


[21-48]:
1qoua_PU1_21-48
CI=0.73


[49-140]:
1qoua_PU1_49-140
CI=4.63


[141-154 ]:
1qoua_PU1_141-154
CI=0.00


Level 2
PU
Molecule needs Java 1.4 Structure


[1-20]:
1qoua_PU2_1-20
CI=0.64


[21-48]:
1qoua_PU2_21-48
CI=0.73


[49-121]:
1qoua_PU2_49-121
CI=4.76


[122-140]:
1qoua_PU2_122-140
CI=0.19


[141-154 ]:
1qoua_PU2_141-154
CI=0.00


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-20]:
1qoua_PU_1-20
CI=0.64


[21-48]:
1qoua_PU_21-48
CI=0.73


[49-76]:
1qoua_PU_49-76
CI=2.02


[77-100]:
1qoua_PU_77-100
CI=2.60


[101-121]:
1qoua_PU_101-121
CI=0.00


[122-140]:
1qoua_PU_122-140
CI=0.19


[141-154 ]:
1qoua_PU_141-154
CI=0.00