Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-165]:
1qqfa_PU0_1-165
CI=2.94


[166-276 ]:
1qqfa_PU0_166-276
CI=2.97


Level 1
PU
Molecule needs Java 1.4 Structure


[1-46]:
1qqfa_PU1_1-46
CI=0.78


[47-165]:
1qqfa_PU1_47-165
CI=3.11


[166-276 ]:
1qqfa_PU1_166-276
CI=2.97


Level 2
PU
Molecule needs Java 1.4 Structure


[1-46]:
1qqfa_PU2_1-46
CI=0.78


[47-165]:
1qqfa_PU2_47-165
CI=3.11


[166-204]:
1qqfa_PU2_166-204
CI=1.62


[205-276 ]:
1qqfa_PU2_205-276
CI=2.44


Level 3
PU
Molecule needs Java 1.4 Structure


[1-46]:
1qqfa_PU3_1-46
CI=0.78


[47-114]:
1qqfa_PU3_47-114
CI=2.31


[115-132]:
1qqfa_PU3_115-132
CI=0.51


[133-165]:
1qqfa_PU3_133-165
CI=0.80


[166-204]:
1qqfa_PU3_166-204
CI=1.62


[205-276 ]:
1qqfa_PU3_205-276
CI=2.44


Level 4
PU
Molecule needs Java 1.4 Structure


[1-46]:
1qqfa_PU4_1-46
CI=0.78


[47-70]:
1qqfa_PU4_47-70
CI=2.03


[71-91]:
1qqfa_PU4_71-91
CI=0.43


[92-114]:
1qqfa_PU4_92-114
CI=0.81


[115-132]:
1qqfa_PU4_115-132
CI=0.51


[133-165]:
1qqfa_PU4_133-165
CI=0.80


[166-204]:
1qqfa_PU4_166-204
CI=1.62


[205-276 ]:
1qqfa_PU4_205-276
CI=2.44


Level 5
PU
Molecule needs Java 1.4 Structure


[1-29]:
1qqfa_PU5_1-29
CI=0.07


[30-46]:
1qqfa_PU5_30-46
CI=0.00


[47-70]:
1qqfa_PU5_47-70
CI=2.03


[71-91]:
1qqfa_PU5_71-91
CI=0.43


[92-114]:
1qqfa_PU5_92-114
CI=0.81


[115-132]:
1qqfa_PU5_115-132
CI=0.51


[133-165]:
1qqfa_PU5_133-165
CI=0.80


[166-204]:
1qqfa_PU5_166-204
CI=1.62


[205-276 ]:
1qqfa_PU5_205-276
CI=2.44


Level 6
PU
Molecule needs Java 1.4 Structure


[1-29]:
1qqfa_PU6_1-29
CI=0.07


[30-46]:
1qqfa_PU6_30-46
CI=0.00


[47-70]:
1qqfa_PU6_47-70
CI=2.03


[71-91]:
1qqfa_PU6_71-91
CI=0.43


[92-114]:
1qqfa_PU6_92-114
CI=0.81


[115-132]:
1qqfa_PU6_115-132
CI=0.51


[133-165]:
1qqfa_PU6_133-165
CI=0.80


[166-204]:
1qqfa_PU6_166-204
CI=1.62


[205-250]:
1qqfa_PU6_205-250
CI=1.60


[251-276 ]:
1qqfa_PU6_251-276
CI=0.51


Level 7
PU
Molecule needs Java 1.4 Structure


[1-29]:
1qqfa_PU7_1-29
CI=0.07


[30-46]:
1qqfa_PU7_30-46
CI=0.00


[47-70]:
1qqfa_PU7_47-70
CI=2.03


[71-91]:
1qqfa_PU7_71-91
CI=0.43


[92-114]:
1qqfa_PU7_92-114
CI=0.81


[115-132]:
1qqfa_PU7_115-132
CI=0.51


[133-165]:
1qqfa_PU7_133-165
CI=0.80


[166-204]:
1qqfa_PU7_166-204
CI=1.62


[205-226]:
1qqfa_PU7_205-226
CI=1.33


[227-250]:
1qqfa_PU7_227-250
CI=0.54


[251-276 ]:
1qqfa_PU7_251-276
CI=0.51


Level 8
PU
Molecule needs Java 1.4 Structure


[1-29]:
1qqfa_PU8_1-29
CI=0.07


[30-46]:
1qqfa_PU8_30-46
CI=0.00


[47-70]:
1qqfa_PU8_47-70
CI=2.03


[71-91]:
1qqfa_PU8_71-91
CI=0.43


[92-114]:
1qqfa_PU8_92-114
CI=0.81


[115-132]:
1qqfa_PU8_115-132
CI=0.51


[133-165]:
1qqfa_PU8_133-165
CI=0.80


[166-182]:
1qqfa_PU8_166-182
CI=0.43


[183-204]:
1qqfa_PU8_183-204
CI=0.74


[205-226]:
1qqfa_PU8_205-226
CI=1.33


[227-250]:
1qqfa_PU8_227-250
CI=0.54


[251-276 ]:
1qqfa_PU8_251-276
CI=0.51


Final level 9

PU
Molecule needs Java 1.4 Structure


[1-29]:
1qqfa_PU_1-29
CI=0.07


[30-46]:
1qqfa_PU_30-46
CI=0.00


[47-70]:
1qqfa_PU_47-70
CI=2.03


[71-91]:
1qqfa_PU_71-91
CI=0.43


[92-114]:
1qqfa_PU_92-114
CI=0.81


[115-132]:
1qqfa_PU_115-132
CI=0.51


[133-149]:
1qqfa_PU_133-149
CI=0.00


[150-165]:
1qqfa_PU_150-165
CI=0.00


[166-182]:
1qqfa_PU_166-182
CI=0.43


[183-204]:
1qqfa_PU_183-204
CI=0.74


[205-226]:
1qqfa_PU_205-226
CI=1.33


[227-250]:
1qqfa_PU_227-250
CI=0.54


[251-276 ]:
1qqfa_PU_251-276
CI=0.51