Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-58]:
1qqqa_PU0_1-58
CI=1.19


[59-143]:
1qqqa_PU0_59-143
CI=2.74


[144-259 ]:
1qqqa_PU0_144-259
CI=2.90


Level 1
PU
Molecule needs Java 1.4 Structure


[1-34]:
1qqqa_PU1_1-34
CI=1.73


[35-58]:
1qqqa_PU1_35-58
CI=0.23


[59-143]:
1qqqa_PU1_59-143
CI=2.74


[144-259 ]:
1qqqa_PU1_144-259
CI=2.90


Level 2
PU
Molecule needs Java 1.4 Structure


[1-34]:
1qqqa_PU2_1-34
CI=1.73


[35-58]:
1qqqa_PU2_35-58
CI=0.23


[59-143]:
1qqqa_PU2_59-143
CI=2.74


[144-216]:
1qqqa_PU2_144-216
CI=3.20


[217-251]:
1qqqa_PU2_217-251
CI=2.06


[252-259 ]:
1qqqa_PU2_252-259
CI=0.00


Level 3
PU
Molecule needs Java 1.4 Structure


[1-34]:
1qqqa_PU3_1-34
CI=1.73


[35-58]:
1qqqa_PU3_35-58
CI=0.23


[59-143]:
1qqqa_PU3_59-143
CI=2.74


[144-200]:
1qqqa_PU3_144-200
CI=3.54


[201-216]:
1qqqa_PU3_201-216
CI=0.11


[217-251]:
1qqqa_PU3_217-251
CI=2.06


[252-259 ]:
1qqqa_PU3_252-259
CI=0.00


Level 4
PU
Molecule needs Java 1.4 Structure


[1-34]:
1qqqa_PU4_1-34
CI=1.73


[35-58]:
1qqqa_PU4_35-58
CI=0.23


[59-101]:
1qqqa_PU4_59-101
CI=2.17


[102-129]:
1qqqa_PU4_102-129
CI=0.67


[130-143]:
1qqqa_PU4_130-143
CI=0.52


[144-200]:
1qqqa_PU4_144-200
CI=3.54


[201-216]:
1qqqa_PU4_201-216
CI=0.11


[217-251]:
1qqqa_PU4_217-251
CI=2.06


[252-259 ]:
1qqqa_PU4_252-259
CI=0.00


Level 5
PU
Molecule needs Java 1.4 Structure


[1-17]:
1qqqa_PU5_1-17
CI=0.00


[18-34]:
1qqqa_PU5_18-34
CI=0.33


[35-58]:
1qqqa_PU5_35-58
CI=0.23


[59-101]:
1qqqa_PU5_59-101
CI=2.17


[102-129]:
1qqqa_PU5_102-129
CI=0.67


[130-143]:
1qqqa_PU5_130-143
CI=0.52


[144-200]:
1qqqa_PU5_144-200
CI=3.54


[201-216]:
1qqqa_PU5_201-216
CI=0.11


[217-251]:
1qqqa_PU5_217-251
CI=2.06


[252-259 ]:
1qqqa_PU5_252-259
CI=0.00


Level 6
PU
Molecule needs Java 1.4 Structure


[1-17]:
1qqqa_PU6_1-17
CI=0.00


[18-34]:
1qqqa_PU6_18-34
CI=0.33


[35-58]:
1qqqa_PU6_35-58
CI=0.23


[59-80]:
1qqqa_PU6_59-80
CI=0.50


[81-101]:
1qqqa_PU6_81-101
CI=0.26


[102-129]:
1qqqa_PU6_102-129
CI=0.67


[130-143]:
1qqqa_PU6_130-143
CI=0.52


[144-200]:
1qqqa_PU6_144-200
CI=3.54


[201-216]:
1qqqa_PU6_201-216
CI=0.11


[217-251]:
1qqqa_PU6_217-251
CI=2.06


[252-259 ]:
1qqqa_PU6_252-259
CI=0.00


Level 7
PU
Molecule needs Java 1.4 Structure


[1-17]:
1qqqa_PU7_1-17
CI=0.00


[18-34]:
1qqqa_PU7_18-34
CI=0.33


[35-58]:
1qqqa_PU7_35-58
CI=0.23


[59-80]:
1qqqa_PU7_59-80
CI=0.50


[81-101]:
1qqqa_PU7_81-101
CI=0.26


[102-129]:
1qqqa_PU7_102-129
CI=0.67


[130-143]:
1qqqa_PU7_130-143
CI=0.52


[144-163]:
1qqqa_PU7_144-163
CI=2.83


[164-200]:
1qqqa_PU7_164-200
CI=0.86


[201-216]:
1qqqa_PU7_201-216
CI=0.11


[217-251]:
1qqqa_PU7_217-251
CI=2.06


[252-259 ]:
1qqqa_PU7_252-259
CI=0.00


Level 8
PU
Molecule needs Java 1.4 Structure


[1-17]:
1qqqa_PU8_1-17
CI=0.00


[18-34]:
1qqqa_PU8_18-34
CI=0.33


[35-58]:
1qqqa_PU8_35-58
CI=0.23


[59-80]:
1qqqa_PU8_59-80
CI=0.50


[81-101]:
1qqqa_PU8_81-101
CI=0.26


[102-129]:
1qqqa_PU8_102-129
CI=0.67


[130-143]:
1qqqa_PU8_130-143
CI=0.52


[144-163]:
1qqqa_PU8_144-163
CI=2.83


[164-180]:
1qqqa_PU8_164-180
CI=0.00


[181-200]:
1qqqa_PU8_181-200
CI=0.81


[201-216]:
1qqqa_PU8_201-216
CI=0.11


[217-251]:
1qqqa_PU8_217-251
CI=2.06


[252-259 ]:
1qqqa_PU8_252-259
CI=0.00


Final level 9

PU
Molecule needs Java 1.4 Structure


[1-17]:
1qqqa_PU_1-17
CI=0.00


[18-34]:
1qqqa_PU_18-34
CI=0.33


[35-58]:
1qqqa_PU_35-58
CI=0.23


[59-80]:
1qqqa_PU_59-80
CI=0.50


[81-101]:
1qqqa_PU_81-101
CI=0.26


[102-129]:
1qqqa_PU_102-129
CI=0.67


[130-143]:
1qqqa_PU_130-143
CI=0.52


[144-163]:
1qqqa_PU_144-163
CI=2.83


[164-180]:
1qqqa_PU_164-180
CI=0.00


[181-200]:
1qqqa_PU_181-200
CI=0.81


[201-216]:
1qqqa_PU_201-216
CI=0.11


[217-235]:
1qqqa_PU_217-235
CI=0.00


[236-251]:
1qqqa_PU_236-251
CI=0.00


[252-259 ]:
1qqqa_PU_252-259
CI=0.00