Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-20]:
1qtna_PU0_1-20
CI=0.00


[21-37]:
1qtna_PU0_21-37
CI=1.83


[38-152 ]:
1qtna_PU0_38-152
CI=2.59


Level 1
PU
Molecule needs Java 1.4 Structure


[1-20]:
1qtna_PU1_1-20
CI=0.00


[21-37]:
1qtna_PU1_21-37
CI=1.83


[38-63]:
1qtna_PU1_38-63
CI=0.64


[64-144]:
1qtna_PU1_64-144
CI=3.29


[145-152 ]:
1qtna_PU1_145-152
CI=0.00


Level 2
PU
Molecule needs Java 1.4 Structure


[1-20]:
1qtna_PU2_1-20
CI=0.00


[21-37]:
1qtna_PU2_21-37
CI=1.83


[38-63]:
1qtna_PU2_38-63
CI=0.64


[64-86]:
1qtna_PU2_64-86
CI=0.08


[87-144]:
1qtna_PU2_87-144
CI=3.02


[145-152 ]:
1qtna_PU2_145-152
CI=0.00


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-20]:
1qtna_PU_1-20
CI=0.00


[21-37]:
1qtna_PU_21-37
CI=1.83


[38-63]:
1qtna_PU_38-63
CI=0.64


[64-86]:
1qtna_PU_64-86
CI=0.08


[87-102]:
1qtna_PU_87-102
CI=0.69


[103-129]:
1qtna_PU_103-129
CI=0.62


[130-144]:
1qtna_PU_130-144
CI=0.00


[145-152 ]:
1qtna_PU_145-152
CI=0.00