Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-75]:
1qtxb_PU0_1-75
CI=2.05


[76-148 ]:
1qtxb_PU0_76-148
CI=1.69


Level 1
PU
Molecule needs Java 1.4 Structure


[1-16]:
1qtxb_PU1_1-16
CI=0.00


[17-64]:
1qtxb_PU1_17-64
CI=2.27


[65-75]:
1qtxb_PU1_65-75
CI=0.00


[76-148 ]:
1qtxb_PU1_76-148
CI=1.69


Level 2
PU
Molecule needs Java 1.4 Structure


[1-16]:
1qtxb_PU2_1-16
CI=0.00


[17-64]:
1qtxb_PU2_17-64
CI=2.27


[65-75]:
1qtxb_PU2_65-75
CI=0.00


[76-101]:
1qtxb_PU2_76-101
CI=0.50


[102-124]:
1qtxb_PU2_102-124
CI=0.97


[125-148 ]:
1qtxb_PU2_125-148
CI=1.33


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-16]:
1qtxb_PU_1-16
CI=0.00


[17-42]:
1qtxb_PU_17-42
CI=1.22


[43-64]:
1qtxb_PU_43-64
CI=1.02


[65-75]:
1qtxb_PU_65-75
CI=0.00


[76-101]:
1qtxb_PU_76-101
CI=0.50


[102-124]:
1qtxb_PU_102-124
CI=0.97


[125-148 ]:
1qtxb_PU_125-148
CI=1.33