Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-35]:
1qw2a_PU0_1-35
CI=2.58


[36-97 ]:
1qw2a_PU0_36-97
CI=3.81


Level 1
PU
Molecule needs Java 1.4 Structure


[1-35]:
1qw2a_PU1_1-35
CI=2.58


[36-56]:
1qw2a_PU1_36-56
CI=0.80


[57-89]:
1qw2a_PU1_57-89
CI=2.77


[90-97 ]:
1qw2a_PU1_90-97
CI=0.00


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-35]:
1qw2a_PU_1-35
CI=2.58


[36-56]:
1qw2a_PU_36-56
CI=0.80


[57-73]:
1qw2a_PU_57-73
CI=1.41


[74-89]:
1qw2a_PU_74-89
CI=0.80


[90-97 ]:
1qw2a_PU_90-97
CI=0.00