Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-73]:
1qwga_PU0_1-73
CI=2.37


[74-205]:
1qwga_PU0_74-205
CI=3.04


[206-251 ]:
1qwga_PU0_206-251
CI=2.26


Level 1
PU
Molecule needs Java 1.4 Structure


[1-73]:
1qwga_PU1_1-73
CI=2.37


[74-133]:
1qwga_PU1_74-133
CI=2.16


[134-205]:
1qwga_PU1_134-205
CI=2.31


[206-251 ]:
1qwga_PU1_206-251
CI=2.26


Level 2
PU
Molecule needs Java 1.4 Structure


[1-19]:
1qwga_PU2_1-19
CI=0.00


[20-73]:
1qwga_PU2_20-73
CI=2.30


[74-133]:
1qwga_PU2_74-133
CI=2.16


[134-205]:
1qwga_PU2_134-205
CI=2.31


[206-251 ]:
1qwga_PU2_206-251
CI=2.26


Level 3
PU
Molecule needs Java 1.4 Structure


[1-19]:
1qwga_PU3_1-19
CI=0.00


[20-73]:
1qwga_PU3_20-73
CI=2.30


[74-133]:
1qwga_PU3_74-133
CI=2.16


[134-162]:
1qwga_PU3_134-162
CI=0.52


[163-205]:
1qwga_PU3_163-205
CI=2.15


[206-251 ]:
1qwga_PU3_206-251
CI=2.26


Level 4
PU
Molecule needs Java 1.4 Structure


[1-19]:
1qwga_PU4_1-19
CI=0.00


[20-73]:
1qwga_PU4_20-73
CI=2.30


[74-99]:
1qwga_PU4_74-99
CI=0.36


[100-133]:
1qwga_PU4_100-133
CI=1.90


[134-162]:
1qwga_PU4_134-162
CI=0.52


[163-205]:
1qwga_PU4_163-205
CI=2.15


[206-251 ]:
1qwga_PU4_206-251
CI=2.26


Level 5
PU
Molecule needs Java 1.4 Structure


[1-19]:
1qwga_PU5_1-19
CI=0.00


[20-73]:
1qwga_PU5_20-73
CI=2.30


[74-99]:
1qwga_PU5_74-99
CI=0.36


[100-133]:
1qwga_PU5_100-133
CI=1.90


[134-162]:
1qwga_PU5_134-162
CI=0.52


[163-185]:
1qwga_PU5_163-185
CI=1.57


[186-205]:
1qwga_PU5_186-205
CI=0.09


[206-251 ]:
1qwga_PU5_206-251
CI=2.26


Level 6
PU
Molecule needs Java 1.4 Structure


[1-19]:
1qwga_PU6_1-19
CI=0.00


[20-73]:
1qwga_PU6_20-73
CI=2.30


[74-99]:
1qwga_PU6_74-99
CI=0.36


[100-133]:
1qwga_PU6_100-133
CI=1.90


[134-162]:
1qwga_PU6_134-162
CI=0.52


[163-185]:
1qwga_PU6_163-185
CI=1.57


[186-205]:
1qwga_PU6_186-205
CI=0.09


[206-233]:
1qwga_PU6_206-233
CI=1.47


[234-251 ]:
1qwga_PU6_234-251
CI=1.33


Level 7
PU
Molecule needs Java 1.4 Structure


[1-19]:
1qwga_PU7_1-19
CI=0.00


[20-38]:
1qwga_PU7_20-38
CI=0.00


[39-73]:
1qwga_PU7_39-73
CI=1.74


[74-99]:
1qwga_PU7_74-99
CI=0.36


[100-133]:
1qwga_PU7_100-133
CI=1.90


[134-162]:
1qwga_PU7_134-162
CI=0.52


[163-185]:
1qwga_PU7_163-185
CI=1.57


[186-205]:
1qwga_PU7_186-205
CI=0.09


[206-233]:
1qwga_PU7_206-233
CI=1.47


[234-251 ]:
1qwga_PU7_234-251
CI=1.33


Level 8
PU
Molecule needs Java 1.4 Structure


[1-19]:
1qwga_PU8_1-19
CI=0.00


[20-38]:
1qwga_PU8_20-38
CI=0.00


[39-57]:
1qwga_PU8_39-57
CI=0.10


[58-73]:
1qwga_PU8_58-73
CI=0.46


[74-99]:
1qwga_PU8_74-99
CI=0.36


[100-133]:
1qwga_PU8_100-133
CI=1.90


[134-162]:
1qwga_PU8_134-162
CI=0.52


[163-185]:
1qwga_PU8_163-185
CI=1.57


[186-205]:
1qwga_PU8_186-205
CI=0.09


[206-233]:
1qwga_PU8_206-233
CI=1.47


[234-251 ]:
1qwga_PU8_234-251
CI=1.33


Final level 9

PU
Molecule needs Java 1.4 Structure


[1-19]:
1qwga_PU_1-19
CI=0.00


[20-38]:
1qwga_PU_20-38
CI=0.00


[39-57]:
1qwga_PU_39-57
CI=0.10


[58-73]:
1qwga_PU_58-73
CI=0.46


[74-99]:
1qwga_PU_74-99
CI=0.36


[100-117]:
1qwga_PU_100-117
CI=0.20


[118-133]:
1qwga_PU_118-133
CI=0.66


[134-162]:
1qwga_PU_134-162
CI=0.52


[163-185]:
1qwga_PU_163-185
CI=1.57


[186-205]:
1qwga_PU_186-205
CI=0.09


[206-233]:
1qwga_PU_206-233
CI=1.47


[234-251 ]:
1qwga_PU_234-251
CI=1.33