Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-46]:
1qwia_PU0_1-46
CI=3.05


[47-140 ]:
1qwia_PU0_47-140
CI=3.70


Level 1
PU
Molecule needs Java 1.4 Structure


[1-46]:
1qwia_PU1_1-46
CI=3.05


[47-80]:
1qwia_PU1_47-80
CI=1.27


[81-96]:
1qwia_PU1_81-96
CI=2.20


[97-140 ]:
1qwia_PU1_97-140
CI=1.86


Level 2
PU
Molecule needs Java 1.4 Structure


[1-29]:
1qwia_PU2_1-29
CI=2.10


[30-46]:
1qwia_PU2_30-46
CI=1.52


[47-80]:
1qwia_PU2_47-80
CI=1.27


[81-96]:
1qwia_PU2_81-96
CI=2.20


[97-140 ]:
1qwia_PU2_97-140
CI=1.86


Level 3
PU
Molecule needs Java 1.4 Structure


[1-29]:
1qwia_PU3_1-29
CI=2.10


[30-46]:
1qwia_PU3_30-46
CI=1.52


[47-63]:
1qwia_PU3_47-63
CI=0.00


[64-80]:
1qwia_PU3_64-80
CI=0.32


[81-96]:
1qwia_PU3_81-96
CI=2.20


[97-140 ]:
1qwia_PU3_97-140
CI=1.86


Final level 4

PU
Molecule needs Java 1.4 Structure


[1-29]:
1qwia_PU_1-29
CI=2.10


[30-46]:
1qwia_PU_30-46
CI=1.52


[47-63]:
1qwia_PU_47-63
CI=0.00


[64-80]:
1qwia_PU_64-80
CI=0.32


[81-96]:
1qwia_PU_81-96
CI=2.20


[97-115]:
1qwia_PU_97-115
CI=0.00


[116-140 ]:
1qwia_PU_116-140
CI=0.59