Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-139]:
1qxma_PU0_1-139
CI=4.91


[140-283 ]:
1qxma_PU0_140-283
CI=5.06


Level 1
PU
Molecule needs Java 1.4 Structure


[1-65]:
1qxma_PU1_1-65
CI=3.37


[66-131]:
1qxma_PU1_66-131
CI=3.46


[132-139]:
1qxma_PU1_132-139
CI=0.00


[140-283 ]:
1qxma_PU1_140-283
CI=5.06


Level 2
PU
Molecule needs Java 1.4 Structure


[1-65]:
1qxma_PU2_1-65
CI=3.37


[66-88]:
1qxma_PU2_66-88
CI=2.46


[89-131]:
1qxma_PU2_89-131
CI=2.95


[132-139]:
1qxma_PU2_132-139
CI=0.00


[140-283 ]:
1qxma_PU2_140-283
CI=5.06


Level 3
PU
Molecule needs Java 1.4 Structure


[1-65]:
1qxma_PU3_1-65
CI=3.37


[66-88]:
1qxma_PU3_66-88
CI=2.46


[89-109]:
1qxma_PU3_89-109
CI=2.32


[110-131]:
1qxma_PU3_110-131
CI=2.32


[132-139]:
1qxma_PU3_132-139
CI=0.00


[140-283 ]:
1qxma_PU3_140-283
CI=5.06


Level 4
PU
Molecule needs Java 1.4 Structure


[1-16]:
1qxma_PU4_1-16
CI=0.11


[17-43]:
1qxma_PU4_17-43
CI=2.18


[44-65]:
1qxma_PU4_44-65
CI=2.16


[66-88]:
1qxma_PU4_66-88
CI=2.46


[89-109]:
1qxma_PU4_89-109
CI=2.32


[110-131]:
1qxma_PU4_110-131
CI=2.32


[132-139]:
1qxma_PU4_132-139
CI=0.00


[140-283 ]:
1qxma_PU4_140-283
CI=5.06


Level 5
PU
Molecule needs Java 1.4 Structure


[1-16]:
1qxma_PU5_1-16
CI=0.11


[17-43]:
1qxma_PU5_17-43
CI=2.18


[44-65]:
1qxma_PU5_44-65
CI=2.16


[66-88]:
1qxma_PU5_66-88
CI=2.46


[89-109]:
1qxma_PU5_89-109
CI=2.32


[110-131]:
1qxma_PU5_110-131
CI=2.32


[132-139]:
1qxma_PU5_132-139
CI=0.00


[140-201]:
1qxma_PU5_140-201
CI=3.47


[202-275]:
1qxma_PU5_202-275
CI=3.54


[276-283 ]:
1qxma_PU5_276-283
CI=0.00


Level 6
PU
Molecule needs Java 1.4 Structure


[1-16]:
1qxma_PU6_1-16
CI=0.11


[17-43]:
1qxma_PU6_17-43
CI=2.18


[44-65]:
1qxma_PU6_44-65
CI=2.16


[66-88]:
1qxma_PU6_66-88
CI=2.46


[89-109]:
1qxma_PU6_89-109
CI=2.32


[110-131]:
1qxma_PU6_110-131
CI=2.32


[132-139]:
1qxma_PU6_132-139
CI=0.00


[140-201]:
1qxma_PU6_140-201
CI=3.47


[202-226]:
1qxma_PU6_202-226
CI=2.57


[227-275]:
1qxma_PU6_227-275
CI=3.00


[276-283 ]:
1qxma_PU6_276-283
CI=0.00


Level 7
PU
Molecule needs Java 1.4 Structure


[1-16]:
1qxma_PU7_1-16
CI=0.11


[17-43]:
1qxma_PU7_17-43
CI=2.18


[44-65]:
1qxma_PU7_44-65
CI=2.16


[66-88]:
1qxma_PU7_66-88
CI=2.46


[89-109]:
1qxma_PU7_89-109
CI=2.32


[110-131]:
1qxma_PU7_110-131
CI=2.32


[132-139]:
1qxma_PU7_132-139
CI=0.00


[140-201]:
1qxma_PU7_140-201
CI=3.47


[202-226]:
1qxma_PU7_202-226
CI=2.57


[227-248]:
1qxma_PU7_227-248
CI=2.49


[249-275]:
1qxma_PU7_249-275
CI=2.26


[276-283 ]:
1qxma_PU7_276-283
CI=0.00


Final level 8

PU
Molecule needs Java 1.4 Structure


[1-16]:
1qxma_PU_1-16
CI=0.11


[17-43]:
1qxma_PU_17-43
CI=2.18


[44-65]:
1qxma_PU_44-65
CI=2.16


[66-88]:
1qxma_PU_66-88
CI=2.46


[89-109]:
1qxma_PU_89-109
CI=2.32


[110-131]:
1qxma_PU_110-131
CI=2.32


[132-139]:
1qxma_PU_132-139
CI=0.00


[140-155]:
1qxma_PU_140-155
CI=0.00


[156-181]:
1qxma_PU_156-181
CI=2.49


[182-201]:
1qxma_PU_182-201
CI=2.25


[202-226]:
1qxma_PU_202-226
CI=2.57


[227-248]:
1qxma_PU_227-248
CI=2.49


[249-275]:
1qxma_PU_249-275
CI=2.26


[276-283 ]:
1qxma_PU_276-283
CI=0.00