Webserver

 

kpred

Knowledge-based algorithm to predict most probable backbone conformations for the protein local structures in terms of Protein Blocks.

OREMPRO

A tool for the structural assessment of protein transmembrane domains.

ORION

ORION (Optimized protein fold RecognitION) is a sensitive method for protein template detection.

iPBA

iPBA is a tool for protein structures mining and superimposition based on similarity in the local backbone conformation.

MulPBA

mulPBA is an efficient tool for comparison of protein structures based on similarity in the local backbone conformation.

Protein Block Expert (PBE)

Web-based protein structure analysis server using a structural alphabet.

PredyFlexy

PredyFlexy predicts from the sequence: (i) the series of Long Structural Prototypes (LSPs), a sophisticated structural alphabet and (ii) the protein flexibility, this last being defined from data coming from X-ray structures and molecular dynamics simulation

VLDP

VLDP webserver is designed to determine protein contacts, accessibility and residue volume using Laguerre diagram.

SWORD

A partitioning algorithm capable of producing multiple alternative domain assignments for a given protein structure.

Protein Peeling 3D

An approach for splitting a 3D protein structure into compact fragments.

Protein Peeling

An approach for splitting a 3D protein structure into compact fragments

COUDES

A tool for predicting beta-turns and their type in a protein or peptide sequence.

LOCPRED

A tool for local structure prediction from protein sequence using a structural alphabet approach.

 

Database

 

KNOTTIN

The reference database on protein knottin structural properties..

RESPIRE

Our database aims at providing a comprehensive structural view of the Red Blood Cell protein content.

TMPL

A database of transmembrane protein structures (α-helical and β-sheet) positioned in the lipid bilayer.

PolyprOnline

Polypronline is a webserver dedicated to the assignment of PolyProline II helices.

PTM-SD

PTM-SD provides an access to proteins for which Post Translational Modifications are both experimentally annotated and structurally resolved.

MitoGenesisDB

The database MitoGenesisDB focuses on the analysis of mitochondrial proteins.

DoSA

DoSA (Database of Structural Alignments) provides improved structure-based sequence alignments of homologous proteins especially focusing on the SVRs (Structurally variable regions.

ANALYCYS*

Database for conservation and conformation of disulphide bonds in homologous protein domains.

PB-PENTAPEPT

PB-PENTAPEPT is a platform which combines a database and a few tools to investigate pentapeptides in protein structures.

 

Software

 

PBxplore

A suite of tools to explore protein structure dynamics with Protein Blocks

Maiden

MAIDEN (Model quality Assessment for Intramembrane Domains using an ENergy criterion) is a statistical potential (or pseudo-energy function) optimized on native membrane protein structures.

Orion

ORION is a new profile-profile fold recognition approach that relies on a better description of the local protein structure to boost distantly protein detection.

ANVIL

ANVIL (Assignment aNd VIsualization of the Lipid bilayer) is aimed at assigning membrane boundaries to a protein 3D structure.

PredyFlexy software

PredyFlexy predicts from the sequence: (i) the series of Long Structural Prototypes (LSPs), a sophisticated structural alphabet and (ii) the protein flexibility.

KAKSI

KAKSI is a software dedicated to the assignment of classical repetitive secondary structure.

 
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