Ephrin type-B receptor 4 (EPHB4)

The protein contains 987 amino acids for an estimated molecular weight of 108270 Da.

 

Receptor tyrosine kinase which binds promiscuously transmembrane ephrin-B family ligands residing on adjacent cells, leading to contact-dependent bidirectional signaling into neighboring cells. The signaling pathway downstream of the receptor is referred to as forward signaling while the signaling pathway downstream of the ephrin ligand is referred to as reverse signaling. Together with its cognate ligand/functional ligand EFNB2 it is involved in the regulation of cell adhesion and migration, and plays a central role in heart morphogenesis, angiogenesis and blood vessel remodeling and permeability. EPHB4-mediated forward signaling controls cellular repulsion and segregation from EFNB2-expressing cells. (updated: June 5, 2019)

Protein identification was indicated in the following studies:

  1. Bryk and co-workers. (2017) Quantitative Analysis of Human Red Blood Cell Proteome. J Proteome Res. 16(8), 2752-2761.
  2. D'Alessandro and co-workers. (2017) Red blood cell proteomics update: is there more to discover? Blood Transfus. 15(2), 182-187.

Methods

The following articles were analysed to gather the proteome content of erythrocytes.

The gene or protein list provided in the studies were processed using the ID mapping API of Uniprot in September 2018. The number of proteins identified and mapped without ambiguity in these studies is indicated below.
Only Swiss-Prot entries (reviewed) were considered for protein evidence assignation.

PublicationIdentification 1Uniprot mapping 2Not mapped /
Obsolete
TrEMBLSwiss-Prot
Goodman (2013)2289 (gene list)227853205992269
Lange (2014)123412347281224
Hegedus (2015)2638262202352387
Wilson (2016)165815281702911068
d'Alessandro (2017)18261817201815
Bryk (2017)20902060101081942
Chu (2018)18531804553621387

1 as available in the article and/or in supplementary material
2 uniprot mapping returns all protein isoforms as one entry

The compilation of older studies can be retrieved from the Red Blood Cell Collection database.

The data and differentiation stages presented below come from the proteomic study and analysis performed by our partners of the GReX consortium, more details are available in their published work.

No sequence conservation computed yet.

This protein is annotated as membranous in Gene Ontology, is annotated as membranous in UniProt, is predicted to be membranous by TOPCONS.


Interpro domains
Total structural coverage: 0%
Model score: 0
No model available.

(right-click above to access to more options from the contextual menu)

VariantDescription
dbSNP:rs34653459
dbSNP:rs55866373
dbSNP:rs17854760
a metastatic melanoma sample
dbSNP:rs55720981
dbSNP:rs36050247
dbSNP:rs55692440
LMPHM7
LMPHM7
dbSNP:rs34918225
a gastric adenocarcinoma sample
dbSNP:rs35638378
CMAVM2
CMAVM2
CMAVM2
CMAVM2
CMAVM2
CMAVM2
Does not affect tyrosine phosphorylation
CMAVM2
CMAVM2
CMAVM2
CMAVM2
CMAVM2
CMAVM2
CMAVM2
CMAVM2
CMAVM2
CMAVM2
CMAVM2
CMAVM2
CMAVM2
CMAVM2
CMAVM2
CMAVM2
CMAVM2
CMAVM2
CMAVM2

No binding partner found

The reference OMIM entry for this protein is 600011

Ephrin receptor ephb4; ephb4
Hepatoma transmembrane kinase; htk
Myk, mouse, homolog of; myk1
Tyro11

CLONING

See 179610 for background on Eph receptors and their ligands, the ephrins. In CD34+ human bone marrow cells and a human hepatocellular carcinoma cell line, Bennett et al. (1994) identified a novel transmembrane tyrosine kinase, which they called hepatoma transmembrane kinase, or HTK. They reported that the predicted 987-amino acid sequence of HTK includes a transmembrane region and signal sequence. The predicted extracellular domain contains a cysteine-rich region and tandem fibronectin type III repeats, while the intracellular domain contains the catalytic domain. Northern blot analysis demonstrated a single HTK transcript abundantly expressed in placenta and in a range of primary tissues and malignant cell lines. It is expressed in fetal, but not adult, brain, and in primitive and myeloid, but not lymphoid, hematopoietic cells. The protein shared amino acid similarity with the Eph subfamily of tyrosine kinases.

GENE FUNCTION

Berclaz et al. (1996) examined the expression of HTK in normal and malignant breast tissue. They found that in normal breast, expression is confined to secretory luminal epithelial cells. They found elevated expression of HTK in several human breast carcinoma cell lines as well as in primary ductal carcinomas of the breast. The authors suggested that HTK may have a role in the differentiation or maintenance of secretory epithelia. Blood vessels form de novo (vasculogenesis) or upon sprouting of capillaries from preexisting blood vessels (angiogenesis). Using high-resolution imaging of zebrafish vascular development, Herbert et al. (2009) uncovered a third mode of blood vessel formation whereby the first embryonic artery and vein, 2 unconnected blood vessels, arise from a common precursor vessel. The first embryonic vein formed by selective sprouting of progenitor cells from the precursor vessel, followed by vessel segregation. Herbert et al. (2009) found that these processes were regulated by the ligand ephrin B2 (600527) and its receptor EphB4, which are expressed in arterial-fated and venous-fated progenitors, respectively, and interact to orient the direction of progenitor migration. Thus, Herbert et al. (2009) concluded that directional control of progenitor migration drives arterial-venous segregation and generation of separate parallel vessels from a single precursor vessel, a process essential for vascular development.

MAPPING

Using 2 independent sets of primers specific for human HTK to amplify DNA from a panel of human-hamster hybrid cell lines, Bennett et al. (1994) demonstrated that the human EPHB4 gene is located on chromosome 7.

ANIMAL MODEL

Gerety et al. (1999) generated mice with a targeted disruption of EphB4 by introducing a tau-lacZ marker into the gene. Unlike the broadly expressed ephrin B2 gene (EFNB2; 600527), EphB4 is uniquely expressed in vascular endothelial and endocardial cells. The authors' analysis also confirmed that EphB4 is preferentially expressed on veins. Remarkably, the phenotype of homozygous EphB4 mutants was virtually symmetric to that of EfnB2 mutants. These data identified EphB4 as the major essential interaction partner of EFNB2 in angiogenesis and further indicated that the requisite function of this receptor is intrinsic to the circulatory system. In addition, these data indicated that EFNB2 and EphB4 mediate reciprocal interactions between arteries and veins that are essential for proper angiogenic remodeling of the ca ... More on the omim web site

Subscribe to this protein entry history

June 7, 2019: Protein entry updated
Automatic update: Entry updated from uniprot information.

Oct. 19, 2018: Additional information
Initial protein addition to the database. This entry was referenced in Bryk and co-workers. (2017).

Oct. 19, 2018: Protein entry updated
Automatic update: OMIM entry 600011 was added.