E3 ubiquitin-protein ligase CHIP (STUB1)

The protein contains 303 amino acids for an estimated molecular weight of 34856 Da.

 

E3 ubiquitin-protein ligase which targets misfolded chaperone substrates towards proteasomal degradation. Collaborates with ATXN3 in the degradation of misfolded chaperone substrates: ATXN3 restricting the length of ubiquitin chain attached to STUB1/CHIP substrates and preventing further chain extension. Ubiquitinates NOS1 in concert with Hsp70 and Hsp40. Modulates the activity of several chaperone complexes, including Hsp70, Hsc70 and Hsp90. Mediates transfer of non-canonical short ubiquitin chains to HSPA8 that have no effect on HSPA8 degradation. Mediates polyubiquitination of DNA polymerase beta (POLB) at 'Lys-41', 'Lys-61' and 'Lys-81', thereby playing a role in base-excision repair: catalyzes polyubiquitination by amplifying the HUWE1/ARF-BP1-dependent monoubiquitination and leading to POLB-degradation by the proteasome. Mediates polyubiquitination of CYP3A4. Ubiquitinates EPHA2 and may regulate the receptor stability and activity through proteasomal degradation. Acts as a co-chaperone for HSPA1A and HSPA1B chaperone proteins and promotes ubiquitin-mediated protein degradation (PubMed:27708256). Negatively regulates the suppressive function of regulatory T-cells (Treg) during inflammation by mediating the ubiquitination and degradation of FOXP3 in a HSPA1A/B-dependent manner (PubMed:23973223). Likely mediates polyubiquitination and downregulates plasma membrane expression of PD-L1/CD274, an immune inhibitory ligand critical for immune tolerance to self and antitumor im (updated: Oct. 10, 2018)

Protein identification was indicated in the following studies:

  1. Wilson and co-workers. (2016) Comparison of the Proteome of Adult and Cord Erythroid Cells, and Changes in the Proteome Following Reticulocyte Maturation. Mol Cell Proteomics. 15(6), 1938-1946.
  2. Bryk and co-workers. (2017) Quantitative Analysis of Human Red Blood Cell Proteome. J Proteome Res. 16(8), 2752-2761.
  3. D'Alessandro and co-workers. (2017) Red blood cell proteomics update: is there more to discover? Blood Transfus. 15(2), 182-187.
  4. Chu and co-workers. (2018) Quantitative mass spectrometry of human reticulocytes reveal proteome-wide modifications during maturation. Br J Haematol. 180(1), 118-133.

Methods

The following articles were analysed to gather the proteome content of erythrocytes.

The gene or protein list provided in the studies were processed using the ID mapping API of Uniprot in September 2018. The number of proteins identified and mapped without ambiguity in these studies is indicated below.
Only Swiss-Prot entries (reviewed) were considered for protein evidence assignation.

PublicationIdentification 1Uniprot mapping 2Not mapped /
Obsolete
TrEMBLSwiss-Prot
Goodman (2013)2289 (gene list)227853205992269
Lange (2014)123412347281224
Hegedus (2015)2638262202352387
Wilson (2016)165815281702911068
d'Alessandro (2017)18261817201815
Bryk (2017)20902060101081942
Chu (2018)18531804553621387

1 as available in the article and/or in supplementary material
2 uniprot mapping returns all protein isoforms as one entry

The compilation of older studies can be retrieved from the Red Blood Cell Collection database.

The data and differentiation stages presented below come from the proteomic study and analysis performed by our partners of the GReX consortium, more details are available in their published work.

No sequence conservation computed yet.

Interpro domains
Total structural coverage: 95%
Model score: 98

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VariantDescription
SCAR16; reduces protein level; does not reduce ubiquitin ligase activity and autoubiquitination
SCAR16
SCAR16
SCAR16
SCAR16
SCAR16
SCAR16
SCAR16
SCAR16
SCAR16
SCAR16
SCAR16

The reference OMIM entry for this protein is 607207

Stip1 homologous and u box-containing protein 1; stub1
C terminus of hsc70-interacting protein; chip

DESCRIPTION

STUB1, or CHIP, is a ubiquitin ligase/cochaperone that participates in protein quality control by targeting a broad range of chaperone protein substrates for degradation (Min et al., 2008).

CLONING

In a search for tetratricopeptide repeat (TPR)-containing proteins, Ballinger et al. (1999) isolated a cDNA encoding STUB1, which they termed CHIP, from a heart cDNA library. The deduced 303-amino acid protein has a molecular mass of 35 kD and contains three 34-amino acid TPR domains at its N terminus, a central domain rich in charged residues, and 2 potential nuclear localization signals. The N terminus shares similarity with several TPR-containing proteins, particularly those that interact with members of the heat-shock protein family. Human CHIP shares 97% and 53% amino acid identity with its mouse and Drosophila homologs, respectively, with the highest conservation in the 94 residues of the C terminus. Northern blot analysis detected a 1.3-kb transcript at highest levels in striated muscle (heart and skeletal muscle), with lower expression in pancreas and brain, and relatively little expression in lung, liver, placenta, and kidney. Expression of CHIP was readily detected in most cell lines and primary culture cells tested, the exceptions being cells of hematopoietic origin and undifferentiated neuronal cells. Transient transfection experiments in COS-7 cells localized CHIP expression to the cytoplasm. In mouse brain, Shi et al. (2013) found expression of the Stub1 gene in the cerebellum, pons, medulla oblongata, hippocampus, and cerebral cortex. The protein was present in Purkinje cells and colocalized with the glutamate receptor subunit Grin2a (138253) in the cerebellum, pons, and medulla oblongata. Coexpression of Stub1 and Fbx2 (607112) increased the degradation of Grin2a. Shi et al. (2014) found expression of STUB1 in human brain, including within Purkinje cells in the molecular and granular regions of the cerebellum.

GENE FUNCTION

Using a yeast 2-hybrid screen, Ballinger et al. (1999) identified HSC70 (600816) and HSP70 (140550) as potential interaction partners for CHIP. In vitro binding assays demonstrated direct interactions between CHIP and both HSC70 and HSP70, and complexes containing CHIP and HSC70 were identified in immunoprecipitates of human skeletal muscle cells in vivo. CHIP interacted with the C-terminal residues 540 to 650 of HSC70, whereas HSC70 interacted with the N-terminal residues 1 to 197 of CHIP, which contain the TPR domain and the adjacent charged domain. Recombinant CHIP inhibited HSP40 (see 604572)-stimulated ATPase activity of HSC70 and HSP70, suggesting that CHIP blocks the forward reaction of the HSC70-HSP70 substrate-binding cycle. Both luciferase refolding and substrate binding in the presence of HSP40 and HSP70 were inhibited by CHIP. These results indicated that CHIP decreases net ATPase activity and reduces chaperone efficiency, and they implicated CHIP in the negative regulation of the forward reaction of the HSC70-HSP70 substrate-binding cycle. Using an in vitro ubiquitylation assay with recombinant proteins, Jiang et al. (2001) demonstrated that CHIP possesses intrinsic E3 ubiquitin ligase activity and promotes ubiquitylation. This activity was dependent on the C-terminal U box, a domain that shares similarity with yeast UFD2 (603753). CHIP interacted functionally and physically with the stress-responsive ubiquitin-conjugating enzyme family UBCH5 (602961 ... More on the omim web site

Subscribe to this protein entry history

May 12, 2019: Protein entry updated
Automatic update: OMIM entry 607207 was added.

Feb. 23, 2019: Protein entry updated
Automatic update: comparative model was added.

Feb. 23, 2019: Protein entry updated
Automatic update: model status changed

Oct. 19, 2018: Additional information
Initial protein addition to the database. This entry was referenced in Bryk and co-workers. (2017).