Phosphorylase b kinase gamma catalytic chain, liver/testis isoform (PHKG2)

The protein contains 406 amino acids for an estimated molecular weight of 46442 Da.

 

Catalytic subunit of the phosphorylase b kinase (PHK), which mediates the neural and hormonal regulation of glycogen breakdown (glycogenolysis) by phosphorylating and thereby activating glycogen phosphorylase. May regulate glycogeneolysis in the testis. In vitro, phosphorylates PYGM (By similarity). (updated: March 4, 2015)

Protein identification was indicated in the following studies:

  1. Goodman and co-workers. (2013) The proteomics and interactomics of human erythrocytes. Exp Biol Med (Maywood) 238(5), 509-518.
  2. Hegedűs and co-workers. (2015) Inconsistencies in the red blood cell membrane proteome analysis: generation of a database for research and diagnostic applications. Database (Oxford) 1-8.
  3. Bryk and co-workers. (2017) Quantitative Analysis of Human Red Blood Cell Proteome. J Proteome Res. 16(8), 2752-2761.

Methods

The following articles were analysed to gather the proteome content of erythrocytes.

The gene or protein list provided in the studies were processed using the ID mapping API of Uniprot in September 2018. The number of proteins identified and mapped without ambiguity in these studies is indicated below.
Only Swiss-Prot entries (reviewed) were considered for protein evidence assignation.

PublicationIdentification 1Uniprot mapping 2Not mapped /
Obsolete
TrEMBLSwiss-Prot
Goodman (2013)2289 (gene list)227853205992269
Lange (2014)123412347281224
Hegedus (2015)2638262202352387
Wilson (2016)165815281702911068
d'Alessandro (2017)18261817201815
Bryk (2017)20902060101081942
Chu (2018)18531804553621387

1 as available in the article and/or in supplementary material
2 uniprot mapping returns all protein isoforms as one entry

The compilation of older studies can be retrieved from the Red Blood Cell Collection database.

The data and differentiation stages presented below come from the proteomic study and analysis performed by our partners of the GReX consortium, more details are available in their published work.

No sequence conservation computed yet.

Interpro domains
Total structural coverage: 100%
Model score: 100

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VariantDescription
GSD9C
GSD9C
GSD9C
GSD9C
dbSNP:rs34006569
dbSNP:rs759992249

The reference OMIM entry for this protein is 172471

Phosphorylase kinase, testis/liver, gamma-2; phkg2

DESCRIPTION

The PHKG2 gene encodes the hepatic and testis isoform of the gamma subunit of phosphorylase kinase (PHK; EC 2.7.11.19). The skeletal muscle isoform of the gamma subunit is encoded by the PHKG1 gene (172470).

CLONING

Whitmore et al. (1994) isolated a clone identified as the PHKG2 gene from a heteronuclear cDNA library constructed from a mouse/human somatic cell hybrid that contained chromosome 16. Most of the sequence showed 100% homology with the sequence of an isoform of a catalytic subunit of phosphorylase kinase (Hanks, 1989).

GENE STRUCTURE

Burwinkel et al. (1998) determined that the PHKG2 gene contains 10 exons and spans 9.5 kb. The positions of introns were highly conserved between PHKG2 and PHKG1. The beginning of intron 2 harbors a highly polymorphic GGT/GT microsatellite repeat.

MAPPING

Whitmore et al. (1994) mapped the PHKG2 gene to chromosome 16p12.1-p11.2 by use of a high-resolution somatic cell panel.

MOLECULAR GENETICS

Maichele et al. (1996) reported that autosomal liver-specific PHK deficiency (glycogen storage disease IXc; GSD9C; 613027) was caused by mutations in the PHKG2 gene. They found homozygous PHKG2 mutations in 3 patients of consanguineous parentage. One mutation was a single basepair insertion in codon 89 that caused a frameshift and premature chain termination (172471.0001). The 3 other mutations resulted in nonconservative replacements of amino acid residues that are highly conserved within the catalytic core regions of all protein kinases. The findings suggested that the PHKG2 gene product is the predominant isoform of catalytic gamma subunit of PHK not only in testis but also in liver, erythrocytes, and possibly other nonmuscle tissues. Burwinkel et al. (1998) identified homozygous translation-terminating mutations in the PHKG2 gene, R442X (17241.0004) and 277delC (172471.0005), in 2 patients with liver phosphorylase kinase deficiency who developed cirrhosis in childhood. As liver phosphorylase kinase deficiency is generally a benign condition and progression to cirrhosis is very rare, the findings suggested to the authors that PHKG2 mutations are particularly associated with an increased cirrhosis risk. Burwinkel et al. (2000) reported compound heterozygosity for missense mutations in the PHKG2 gene (172471.0006; 172471.0007) in a child with phosphorylase kinase deficiency and cirrhosis. Roscher et al. (2014) reported 3 novel mutations in the PHKG2 gene resulting in GSD IXc.

ANIMAL MODEL

Malthus et al. (1980) described deficiency of liver phosphorylase kinase in rats and concluded that it was an autosomal recessive trait. Apart from hepatomegaly, the affected rats appear healthy. Clark and Haynes (1988) described autosomal recessive glycogen storage disease in the rat (gsd/gsd). Maichele et al. (1996) identified a homozygous mutation in the rat Phkg2 gene (D215N) as responsible for the gsd phenotype in the rat. ... More on the omim web site

Subscribe to this protein entry history

Feb. 2, 2018: Protein entry updated
Automatic update: Uniprot description updated

Dec. 19, 2017: Protein entry updated
Automatic update: Uniprot description updated

Nov. 23, 2017: Protein entry updated
Automatic update: Uniprot description updated

June 20, 2017: Protein entry updated
Automatic update: comparative model was added.

March 16, 2016: Protein entry updated
Automatic update: OMIM entry 172471 was added.

Jan. 25, 2016: Protein entry updated
Automatic update: model status changed