• Protein Blocks dihedral angles with the 8 consecutive dihedral angles for the 16 Protein Blocks.
• Non-redundant protein Databank encoded in terms of Protein Blocks and secondary structures.
• The code of my PDB reader (C lang.).
• Code of Hybrid Chromosome Model.
• Ma thèse (en français) version Pdf.
• Complete archives of J-PBPS (warning : ~8 Mo with the many help files).

  For only the java files, click here.

  For an online version, click here.

• Supplementary data for Protein Blocks article (Proteins, 2000) [ abstract].
  • Color Figure 2.
  • Matrices for the 16 Protein Blocks prediction (simple).
  • Matrices for the 16 Protein Blocks prediction (sequence families).
• Supplementary data for Hybrid Protein Model article (Bioinformatics, 2003) [ abstract].
• Les rapports de stage de Laurent Fourrier, Saoud Soulef et Aurélie Urbain.
• The TiMBer software (v. 0.5 - 2002).

Pictures, Animations and videos :

• Visualisation of Protein Blocks with different softwares.
• Movies of 10MH done with molscript and raster3D with different secondary structure assignments (DSSP, STRIDE, DEFINE, PSEA, PCURVE, XTLSSTR and SECSTR) and the Protein Blocks (PB). For more details please look at the local structure descriptions.
• Visualisation of Porins with different softwares.
• Visualisation of aB-cristalline structural models.

Misc. :

• head in Java (... :-} ...).

  For the "java" files, click here.

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