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Sequences & 3D models

Below are fixed pre-compiled database outputs

You can switch between one (default, faster) or all family display     (one selected)

Agouti-related	Alpha-amylase inhibitor	Algae	Bacteria	Bug
Ciliate	Conotoxin1	Conotoxin2	Conotoxin3	Cyclotide
Fungi1	Fungi2	Gurmarin-like	Horseshoe crab	Insect1
Insect2	Maize	Metallocarboxypeptidase inhibitor	Mycetozoa	Plant antimicrobial
Plant defensin	Plant toxin	Plant toxin2	Scorpion1	Scorpion2
Serine protease inhibitor1	Serine protease inhibitor2	Serine protease inhibitor3	Spider	Sponge
Trematoda	Trichoplax	Virus1	Virus2	Water flea

Please note the link significations in the following table
	points at individual protein cards (sequence, "Colliers de Perles" ...)
Jmol	runs the Jmol viewing applet (loops '(a)', 'b', 'c', '(d)' and 'e' are colored green, salmon, aquamarine, light blue and pink, respectively
3D model	point at PDB files containing modeled 3D structures for download
	Note: superimposed PDBs and/or 3D models can be viewed (Jmol) using the checkboxes and the form below

Bacteria

14 sequences for Bacteria knottins

To display Sequence alignments OR Jmol Structural superimpositions of selected knottins:
1 - Use the checkboxes to make selection or use the 'Select All' button
2 - Choose either a 1D Sequence alignment or a 3D Structural superimposition

	Nomenclature	SwissProt	PDB	Family	Descriptor	Source	Tissue	Authors	PubMed
	Jmol (5)4.0(4)8	A6G0L6_9DELT Pfam	3D model	Bacteria	Putative uncharacterized protein	Plesiocystis pacifica SIR-1	_	_...	_
					MSSRPSWALC VMLAGLVGVA ACKNDKGPGD VPKGDAAGSP GSTPVVEDPG VEPDAQPMIPDSEPEPAAEA GGEAEPAIDT TTTVVVGDAP CKDDSDCVPA TCCHPTACTN PHDAPDCSATSCTMSCEIGT LDCFGGCLCQ DGKCAAKQWT PS
	Jmol (6)6.0(4)7	B5EFE3_GEOBB Pfam	3D model	Bacteria	Putative uncharacterized protein	Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622)	_	_...	_
					MKKGGRVRAL SKLLFGVVLL LHAGCAGVQE KSPAFLDTAE RKCLKEGELC STLNDECCPGYRCYIGLEPR CIRNPGN
	Jmol (6)5.0(3)4	B5YI56_THEYD Pfam	3D model	Bacteria	Putative uncharacterized protein	Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 /YP87)	_	_...	_
					MRKKLYLIIV LLFAFLVVGF AVAQNKDNST AFQKVDYCLA MNVDGKMENM ISAKPCTPSGWWCTSSGQCC SGRCTNNVCD
	Jmol (6)6.0(4)7	C6E8L6_GEOSM Pfam	3D model	Bacteria	Putative uncharacterized protein	Geobacter sp. (strain M21)	_	_...	_
					MKKTGIVRAL SMVLVNIALL FAAGCASVQE KPPAFMDTAA KNCLKEGEPC STLNNECCPGYRCYIGLDPR CVRDPGEN
	Jmol (5)5.0(3)10	D6TQA3_9CHLR Pfam	3D model	Bacteria	Putative uncharacterized protein	Ktedonobacter racemifer DSM 44963	_	_...	_
					MASSHFDELT RSIARSTSRR QAIKAIVVGT LGGALGFSGV RIAGAVGCLH SGRCKHDNDCCSKVCRFTST GGDFFCG
	Jmol (6)5.0(3)10	D6TQA4_9CHLR Pfam	3D model	Bacteria	Putative uncharacterized protein	Ktedonobacter racemifer DSM 44963	_	_...	_
					MSANRFEELT RVVVSSTSRR QALKTLAVGV LGGALGFGEI HTARAAGCKS SASTCVHSSDCCSKRCFYSG VAGGLVCA
	Jmol (5)4.0(5)7	D7VU77_9FLAO Pfam	3D model	Bacteria	Putative uncharacterized protein	Chryseobacterium gleum ATCC 35910	_	_...	_
					MKKLKRNDLK KIDGGLIAPI IMCDENMNCP PNLCCTSGYI CRDWRKYPCI
	Jmol (5)4.0(3)4	D7W802_9FLAO Pfam	3D model	Bacteria	Putative uncharacterized protein	Chryseobacterium gleum ATCC 35910	_	_...	_
					MKNLKKLSRQ VQKEIKGSGP FKRCTEHYEC PGGSCCHNTC VVNPCPLE
	Jmol (5)4.0(3)4	D7W803_9FLAO Pfam	3D model	Bacteria	Putative uncharacterized protein	Chryseobacterium gleum ATCC 35910	_	_...	_
					MKNLKKLSRN AAKEINGGLG PFRCSITRPC SVGYCCNGEC LDHDCMIEP
	Jmol (5)4.0(4)7	D7W804_9FLAO Pfam	3D model	Bacteria	Putative uncharacterized protein	Chryseobacterium gleum ATCC 35910	_	_...	_
					MKKSHLKRLN RQEQKGIIGG AIKKCGDDSD CGPYNCCVNS VCTFIPTSEC GPI
	Jmol (6)7.0(4)4	E4RW62_LEAB4 Pfam	3D model	Bacteria	Putative uncharacterized protein	Leadbetterella byssophila (strain DSM 17132 / KACC 11308 / 4M15)	_	_...	_
					MSKPKMNFAN LQGKLGRDEM SKIMAGSGNC QANNQSCSTA NQLNCCSGLQ CTNYKCGYPTIT
	Jmol (6)6.0(4)7	E8WJ75_GEOS8 Pfam	3D model	Bacteria	Putative uncharacterized protein	Geobacter sp. (strain M18)	_	_...	_
					METARRGCAI PVLLAVIFQL LTACAGGKEN SRASIGLARD DSSKGDVAAA VKAKKENLPDQTTSEKRCLK EGEPCSTLND ECCPGYRCPM GLDPKCIRNP
	Jmol (5)4.0(5)7	A0A1N6YRQ9_9FLAO Pfam	3D model	Bacteria	Uncharacterized protein	Chryseobacterium sp. RU33C	-	-	-
					MKKLKRNDLR KIDGGLIAPV IMCDENMNCP ANLCCTSGYI CRDWRKYPCI
	Jmol (5)4.0(14)7	Q1D0P9_MYXXD Pfam	3D model	Bacteria	Uncharacterized protein	Myxococcus xanthus DK 1622	-	-	-
					MLGVTLGGGG VGCDGLEDLP LGDVPPVLSD KTCYTDDDCV ADACCGLGTA VTHADEGPTC RAPCTSGCPE GSIDCGRCIP TCREARCAAA CQ

To display Sequence alignments OR Jmol Structural superimpositions of selected knottins:
1 - Use the checkboxes to make selection or use the 'Select All' button
2 - Choose either a 1D Sequence alignment or a 3D Structural superimposition