PTM
			
		
		

			

				
PTM
				
N-linked Glycosylation
			
		

		

			

				
Sequence Information
			

		
		

			

				
Uniprot AC
				
P38993
			
			

				
Organism
				
YEAST (Baker's yeast)
			
			

				
Modified Amino Acid
				
N(Asn) 292
			
			

				
Annotation dbPTM details
				
N-linked (GlcNAc...).
			
		

		

			

				
Structure Information
			

		
		

			

				
PDB ID Code
				
1ZPU
			
			

				
Model
				
-
			
			

				
Chain
				
C
			
			

				
Position
				
292
			
			

				
SCOP Class
				
None
			
			

				
MODRES
				
GLYCOSYLATION SITE                       
			
		

		

			

				
Related PTM
			

		
		

			

				
Found in same PDB Chain
				
27 77 88 113 194 198 244 300 359 381
			
			

				
Found in same Uniprot AC
Sort by:
PDB ID Code
  (idpdb-chain_aa)
Sequence position
  (aa_idpdb-chain)
				
1ZPU-A_N27	1ZPU-A_N77	1ZPU-A_N88	1ZPU-A_N113	
1ZPU-A_N194	1ZPU-A_N198	1ZPU-A_N244	1ZPU-A_N292	
1ZPU-A_N300	1ZPU-A_N359	1ZPU-A_N381	1ZPU-B_N27	
1ZPU-B_N77	1ZPU-B_N88	1ZPU-B_N113	1ZPU-B_N194	
1ZPU-B_N198	1ZPU-B_N244	1ZPU-B_N292	1ZPU-B_N300	
1ZPU-B_N359	1ZPU-B_N381	1ZPU-C_N27	1ZPU-C_N77	
1ZPU-C_N88	1ZPU-C_N113	1ZPU-C_N194	1ZPU-C_N198	
1ZPU-C_N244	1ZPU-C_N300	1ZPU-C_N359	1ZPU-C_N381	
1ZPU-D_N27	1ZPU-D_N77	1ZPU-D_N88	1ZPU-D_N113	
1ZPU-D_N194	1ZPU-D_N198	1ZPU-D_N244	1ZPU-D_N292	
1ZPU-D_N300	1ZPU-D_N359	1ZPU-E_N27	1ZPU-E_N77	
1ZPU-E_N88	1ZPU-E_N113	1ZPU-E_N194	1ZPU-E_N198	
1ZPU-E_N244	1ZPU-E_N292	1ZPU-E_N300	1ZPU-E_N359	
1ZPU-F_N27	1ZPU-F_N77	1ZPU-F_N88	1ZPU-F_N113	
1ZPU-F_N194	1ZPU-F_N198	1ZPU-F_N244	1ZPU-F_N292	
1ZPU-F_N300	1ZPU-F_N359
N27_1ZPU-A	N27_1ZPU-B	N27_1ZPU-C	N27_1ZPU-D	
N27_1ZPU-E	N27_1ZPU-F	

N77_1ZPU-A	N77_1ZPU-B	N77_1ZPU-C	N77_1ZPU-D	
N77_1ZPU-E	N77_1ZPU-F	

N88_1ZPU-A	N88_1ZPU-B	N88_1ZPU-C	N88_1ZPU-D	
N88_1ZPU-E	N88_1ZPU-F	

N113_1ZPU-A	N113_1ZPU-B	N113_1ZPU-C	N113_1ZPU-D	
N113_1ZPU-E	N113_1ZPU-F	

N194_1ZPU-A	N194_1ZPU-B	N194_1ZPU-C	N194_1ZPU-D	
N194_1ZPU-E	N194_1ZPU-F	

N198_1ZPU-A	N198_1ZPU-B	N198_1ZPU-C	N198_1ZPU-D	
N198_1ZPU-E	N198_1ZPU-F	

N244_1ZPU-A	N244_1ZPU-B	N244_1ZPU-C	N244_1ZPU-D	
N244_1ZPU-E	N244_1ZPU-F	

N292_1ZPU-A	N292_1ZPU-B	N292_1ZPU-D	N292_1ZPU-E	
N292_1ZPU-F	

N300_1ZPU-A	N300_1ZPU-B	N300_1ZPU-C	N300_1ZPU-D	
N300_1ZPU-E	N300_1ZPU-F	

N359_1ZPU-A	N359_1ZPU-B	N359_1ZPU-C	N359_1ZPU-D	
N359_1ZPU-E	N359_1ZPU-F	

N381_1ZPU-A	N381_1ZPU-B	N381_1ZPU-C
			
		
	
		
	

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      In these cases it is recommended to use the PyMOL script to visualize the PTM site in 3D.

	Download

	
If you want to use this structure as a template for modelisation with Modeller, you can use the following sequence to build the alignment file "*.ali".

To avoid the classical Modeller error :

			'Number of residues in the alignment and pdb files are different'(see FAQ n°17),

the missing residues, non-classical amino-acids, and sequence gaps have been replaced by a "X" symbol.
			

1) align this sequence with your sequence to modelised;
2) replace the "X" by "-" in the obtained alignement, then build your "*.ali" file;
3) use Modeller to make your models;
4) And finally use the following information found in the PDB to add this PTM in your models (see FAQ n°8 & 9 and this archive of Modeller usage).
			

			

			

				

MODRES 1ZPU ASN C  292  ASN  GLYCOSYLATION SITE                                 
SHEET    2   P 5 ASN C 292  VAL C 298  1  O  TYR C 296   N  TRP C 201           
LINK         ND2 ASN C 292                 C1  NAG X   1     1555   1555  1.47  
ATOM  10697  N   ASN C 292      49.673 124.790  99.450  1.00 69.40           N  
ATOM  10698  CA  ASN C 292      49.517 123.474  98.871  1.00 69.42           C  
ATOM  10699  C   ASN C 292      50.688 122.546  99.138  1.00 69.09           C  
ATOM  10700  O   ASN C 292      51.830 122.967  99.134  1.00 69.43           O  
ATOM  10701  CB  ASN C 292      49.082 123.532  97.394  1.00 69.94           C  
ATOM  10702  CG  ASN C 292      49.687 124.688  96.625  1.00 70.17           C  
ATOM  10703  OD1 ASN C 292      50.874 124.650  96.322  1.00 72.74           O  
ATOM  10704  ND2 ASN C 292      48.861 125.701  96.255  1.00 69.41           N  
CAVEAT   4 1ZPU    CHIRALITY AT ATOM C1 NAG X 1 HAS WRONG CHIRALITY AT ATOM C1  
LINK         O4  NAG X   1                 C1  NAG X   2     1555   1555  1.45  
HETATM26403  C1  NAG X   1      49.179 126.251  94.929  1.00 66.95           C  
HETATM26404  C2  NAG X   1      50.216 127.120  94.213  1.00 64.71           C  
HETATM26405  C3  NAG X   1      49.585 128.051  93.172  1.00 65.31           C  
HETATM26406  C4  NAG X   1      48.786 127.248  92.153  1.00 66.09           C  
HETATM26407  C5  NAG X   1      47.780 126.437  92.979  1.00 66.03           C  
HETATM26408  C6  NAG X   1      46.822 125.593  92.141  1.00 64.99           C  
HETATM26409  C7  NAG X   1      52.336 127.985  95.070  1.00 63.17           C  
HETATM26410  C8  NAG X   1      53.175 126.873  94.497  1.00 62.83           C  
HETATM26411  N2  NAG X   1      51.002 127.879  95.158  1.00 63.64           N  
HETATM26412  O3  NAG X   1      50.579 128.795  92.505  1.00 64.42           O  
HETATM26413  O4  NAG X   1      48.176 128.128  91.223  1.00 68.10           O  
HETATM26414  O5  NAG X   1      48.490 125.585  93.878  1.00 67.57           O  
HETATM26415  O6  NAG X   1      47.564 124.748  91.294  1.00 64.63           O  
HETATM26416  O7  NAG X   1      52.914 128.984  95.454  1.00 62.03           O  
LINK         O4  NAG X   2                 C1  BMA X   3     1555   1555  1.45  
HETATM26417  C1  NAG X   2      48.491 127.875  89.833  1.00 69.80           C  
HETATM26418  C2  NAG X   2      47.321 128.373  88.991  1.00 70.08           C  
HETATM26419  C3  NAG X   2      47.550 128.166  87.494  1.00 71.74           C  
HETATM26420  C4  NAG X   2      48.853 128.826  87.055  1.00 73.35           C  
HETATM26421  C5  NAG X   2      49.995 128.414  88.000  1.00 73.23           C  
HETATM26422  C6  NAG X   2      51.237 129.258  87.734  1.00 74.21           C  
HETATM26423  C7  NAG X   2      45.096 128.455  89.947  1.00 69.71           C  
HETATM26424  C8  NAG X   2      43.745 127.808  90.016  1.00 68.49           C  
HETATM26425  N2  NAG X   2      46.081 127.751  89.392  1.00 69.82           N  
HETATM26426  O3  NAG X   2      46.479 128.738  86.778  1.00 71.00           O  
HETATM26427  O4  NAG X   2      49.137 128.475  85.709  1.00 76.13           O  
HETATM26428  O5  NAG X   2      49.665 128.543  89.387  1.00 71.70           O  
HETATM26429  O6  NAG X   2      52.268 128.806  88.587  1.00 75.69           O  
HETATM26430  O7  NAG X   2      45.261 129.583  90.404  1.00 70.56           O  
HETATM26431  C1  BMA X   3      48.789 129.554  84.809  1.00 78.20           C  
HETATM26432  C2  BMA X   3      49.894 129.839  83.784  1.00 79.08           C  
HETATM26433  C3  BMA X   3      49.491 130.964  82.825  1.00 80.15           C  
HETATM26434  C4  BMA X   3      48.054 130.811  82.291  1.00 80.62           C  
HETATM26435  C5  BMA X   3      47.084 130.491  83.447  1.00 80.81           C  
HETATM26436  C6  BMA X   3      45.599 130.336  83.051  1.00 81.49           C  
HETATM26437  O2  BMA X   3      50.200 128.689  83.024  1.00 79.18           O  
HETATM26438  O3  BMA X   3      50.426 130.994  81.765  1.00 80.01           O  
HETATM26439  O4  BMA X   3      47.640 131.977  81.594  1.00 80.84           O  
HETATM26440  O5  BMA X   3      47.550 129.341  84.151  1.00 79.54           O  
HETATM26441  O6  BMA X   3      45.379 130.227  81.652  1.00 82.53           O