Sequence     &     Structural     Information 
	

		
			

				PTM
			

		
		
			

				PTM
				Acetylation
			

		

		
			

				Sequence Information
			


		
		
			

				Uniprot AC
				P62805
			

			

				Organism
				HUMAN (Human)
			

			

				Modified Amino Acid
				K(Lys) 17
			

			

				Annotation dbPTM details
				N6-acetyllysine.
N6-acetyllysine		
			

		

		
			

				Structure Information
			


		
		
			

				PDB ID Code
				3O36
			

			

				Model
				-
			

			

				Chain
				E
			

			

				Position
				16
			

			

				SCOP Class
				None
			

			

				MODRES
				N(6)-ACETYLLYSINE                        
			

		

		
			

				Related PTM
			


		
		
			

				Found in same PDB Chain
				-
			

			

				Found in same Uniprot AC
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PDB ID Code
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Sequence position
  (aa_idpdb-chain)
Gallery (?)
Slide 1
Slide 2
Example Frame 



Note: As the images production is automatic, the focus on the PTM site could not be the most optimized.
      In these cases it is recommended to use the PyMOL script to visualize the PTM site in 3D.
Alignment
(?) 

	           Numerotation

	(?)       Uniprot Sequence
	(?)                Clustal
	(?)           PDB Sequence
	(?)        PDB Information
	(?)          DSSP Sequence
	(?) Protein Block Sequence
	
         1         2         3         4         5         6         7         8         9         10        
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MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
              ** ***                                                                                   
--------------GAXRHR-----------------------------------------------------------------------------------
              __HMMM                                                                                   
              CCC                                                                                      
              ZZZ

Scripts     (PyMol,     Modeller,     ...)

PyMol 
	Download
Modeller 
	
If you want to use this structure as a template for modelisation with Modeller, you can use the following sequence to build the alignment file "*.ali".

To avoid the classical Modeller error :

			'Number of residues in the alignment and pdb files are different'(see FAQ n°17),

the missing residues, non-classical amino-acids, and sequence gaps have been replaced by a "X" symbol.
GAXXXX 
1) align this sequence with your sequence to modelised;
2) replace the "X" by "-" in the obtained alignement, then build your "*.ali" file;
3) use Modeller to make your models;
4) And finally use the following information found in the PDB to add this PTM in your models (see FAQ n°8 & 9 and this archive of Modeller usage).
			

			

			
				

MODRES 3O36 ALY E   16  LYS  N(6)-ACETYLLYSINE                                  
LINK         C   ALA E  15                 N   ALY E  16     1555   1555  1.32  
HETATM 2956  OH  ALY E  16     -19.016   0.028  38.003  1.00 22.94           O  
HETATM 2957  CH  ALY E  16     -17.967  -0.015  37.400  1.00 24.89           C  
HETATM 2958  CH3 ALY E  16     -16.690   0.409  38.065  1.00 26.66           C  
HETATM 2959  NZ  ALY E  16     -17.938  -0.449  36.142  1.00 25.78           N  
HETATM 2960  CE  ALY E  16     -19.171  -0.859  35.508  1.00 28.78           C  
HETATM 2961  CD  ALY E  16     -18.855  -1.330  34.127  1.00 31.54           C  
HETATM 2962  CG  ALY E  16     -20.123  -1.747  33.507  1.00 19.92           C  
HETATM 2963  CB  ALY E  16     -19.956  -2.460  32.194  1.00 19.92           C  
HETATM 2964  CA  ALY E  16     -21.280  -2.383  31.457  1.00 44.05           C  
HETATM 2965  N   ALY E  16     -22.327  -2.780  32.373  1.00 52.93           N  
HETATM 2966  C   ALY E  16     -21.283  -3.215  30.193  1.00 45.30           C  
HETATM 2967  O   ALY E  16     -20.202  -3.435  29.613  1.00 42.64           O  
TER    2968      ALY E  16