Sequence     &     Structural     Information 
	

		
			

				PTM
			

		
		
			

				PTM
				Acetylation
			

		

		
			

				Sequence Information
			


		
		
			

				Uniprot AC
				P62805
			

			

				Organism
				HUMAN (Human)
			

			

				Modified Amino Acid
				K(Lys) 13
			

			

				Annotation dbPTM details
				N6-acetyllysine.
Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO)
N6-acetyllysine		
			

		

		
			

				Structure Information
			


		
		
			

				PDB ID Code
				3QZV
			

			

				Model
				-
			

			

				Chain
				C
			

			

				Position
				12
			

			

				SCOP Class
				None
			

			

				MODRES
				N(6)-ACETYLLYSINE                        
			

		

		
			

				Related PTM
			


		
		
			

				Found in same PDB Chain
				-
			

			

				Found in same Uniprot AC
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PDB ID Code
  (idpdb-chain_aa)
Sequence position
  (aa_idpdb-chain)
Gallery (?)
Slide 1
Slide 2
Example Frame 



Note: As the images production is automatic, the focus on the PTM site could not be the most optimized.
      In these cases it is recommended to use the PyMOL script to visualize the PTM site in 3D.
Alignment
(?) 

	           Numerotation

	(?)       Uniprot Sequence
	(?)                Clustal
	(?)           PDB Sequence
	(?)        PDB Information
	(?)          DSSP Sequence
	(?) Protein Block Sequence
	
         1         2         3         4         5         6         7         8         9         10        
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MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
       ***** *****                                                                                     
-------GKGLGXGGAKR-------------------------------------------------------------------------------------
       _____HMMMMM                                                                                     
       CCSSCC                                                                                          
       ZZfbZZ

Scripts     (PyMol,     Modeller,     ...)

PyMol 
	Download
Modeller 
	
If you want to use this structure as a template for modelisation with Modeller, you can use the following sequence to build the alignment file "*.ali".

To avoid the classical Modeller error :

			'Number of residues in the alignment and pdb files are different'(see FAQ n°17),

the missing residues, non-classical amino-acids, and sequence gaps have been replaced by a "X" symbol.
GKGLGXXXXXX 
1) align this sequence with your sequence to modelised;
2) replace the "X" by "-" in the obtained alignement, then build your "*.ali" file;
3) use Modeller to make your models;
4) And finally use the following information found in the PDB to add this PTM in your models (see FAQ n°8 & 9 and this archive of Modeller usage).
			

			

			
				

MODRES 3QZV ALY C   12  LYS  N(6)-ACETYLLYSINE                                  
LINK         C   GLY C  11                 N   ALY C  12     1555   1555  1.33  
HETATM 1408  OH  ALY C  12       2.233   6.052 -12.183  1.00 31.43           O  
ANISOU 1408  OH  ALY C  12     3376   5570   2994   -804    206   -991       O  
HETATM 1409  CH  ALY C  12       2.439   7.255 -12.264  1.00 33.54           C  
ANISOU 1409  CH  ALY C  12     3669   5813   3260   -744      2   -435       C  
HETATM 1410  CH3 ALY C  12       3.679   7.773 -12.965  1.00 34.66           C  
ANISOU 1410  CH3 ALY C  12     3749   6172   3247  -1083    164   -375       C  
HETATM 1411  NZ  ALY C  12       1.651   8.188 -11.729  1.00 33.56           N  
ANISOU 1411  NZ  ALY C  12     3693   5526   3533   -402   -317     97       N  
HETATM 1412  CE  ALY C  12       0.450   7.836 -10.976  1.00 32.90           C  
ANISOU 1412  CE  ALY C  12     3568   5321   3612    -97   -400     24       C  
HETATM 1413  CD  ALY C  12      -0.717   8.662 -11.471  1.00 39.82           C  
ANISOU 1413  CD  ALY C  12     4181   6459   4491    -41   -750    649       C  
HETATM 1414  CG  ALY C  12      -1.973   8.189 -10.761  1.00 41.37           C  
ANISOU 1414  CG  ALY C  12     4199   6681   4838    200   -741    448       C  
HETATM 1415  CB  ALY C  12      -3.143   9.065 -11.149  1.00 48.66           C  
ANISOU 1415  CB  ALY C  12     4691   7789   6010    394  -1125   1053       C  
HETATM 1416  CA  ALY C  12      -4.288   8.914 -10.154  1.00 49.12           C  
ANISOU 1416  CA  ALY C  12     4466   7748   6448    758  -1013    756       C  
HETATM 1417  N   ALY C  12      -4.812   7.557 -10.225  1.00 47.97           N  
ANISOU 1417  N   ALY C  12     4284   8116   5827    358   -832    382       N  
HETATM 1418  C   ALY C  12      -5.377   9.895 -10.562  1.00 56.55           C  
ANISOU 1418  C   ALY C  12     4814   8758   7914   1078  -1429   1359       C  
HETATM 1419  O   ALY C  12      -6.421   9.498 -11.080  1.00 61.09           O  
ANISOU 1419  O   ALY C  12     4941   9980   8289    915  -1646   1546       O  
TER    1420      ALY C  12